PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031112-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 171aa    MW: 19261.7 Da    PI: 4.5947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031112-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.8e-29331285100
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ r++C ++C++   f +++ +kf ++h++FGa nv+kl+++lp +++ da++s+vyeA ar++dPv G+vg i++lq q++ l+++++++
  PSME_00031112-RA  33 CKMERKECLENCTILYRFVSNDLHKFSILHQVFGACNVIKLIQDLPSDQKIDAVNSMVYEASARLQDPVFGCVGRIQRLQLQISDLESQISAT 125
                       ******************************************************************************************999 PP

            DUF260  98 kee 100
                       ++ 
  PSME_00031112-RA 126 QAT 128
                       875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.35428129IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-2832126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
NLGGIVAAMQ QMMSNDKEKP RTQFPSAAFH DQCKMERKEC LENCTILYRF VSNDLHKFSI  60
LHQVFGACNV IKLIQDLPSD QKIDAVNSMV YEASARLQDP VFGCVGRIQR LQLQISDLES  120
QISATQATIE KIRYLQSIRQ VSNSKANPTI STSLNDDDGE DEDLFDSELT D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-26201346114LOB family transfactor Ramosa2.1
5ly0_B1e-26201346114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SK081e-31LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA9P1U31e-55A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-33LOB domain-containing protein 1