PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031365-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family E2F/DP
Protein Properties Length: 372aa    MW: 40901.4 Da    PI: 9.5598
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031365-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.72.9e-26211292371
           E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +++Lr++++k   + +k+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
  PSME_00031365-RA 211 GRGLRQFSMK---VSQKVESkGRTTYNEVADELVAEyanmdstlvspdrqqyDEKNIRRRVYDALNVLMAMEIISK-EKKEIQWKG 292
                       689*******...99999999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-43205297IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-31209292IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.7E-24212292IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-20212293IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.1E-4299371IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.6E-15299361No hitNo description
PfamPF087819.9E-15300360IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEGESAPSGL ITQQIAHHGK HAHRGDPRAH AIRVNGTLVG GLKAIACAVE SQPHLPKVAV  60
SSSCDKLRVP PVGQLDQEVA SGTEEQQHIQ LFQILLTIIA VYRKTSAARM KVDENKSTPQ  120
QGEGEYTSNV IAGRCSRTSA CATGQSISVE SGSAGSASRG SDAAIATPAQ NNHMARVQHL  180
DIHQEDLDSP ETAGTRKRKR VPRVNGGEKG GRGLRQFSMK VSQKVESKGR TTYNEVADEL  240
VAEYANMDST LVSPDRQQYD EKNIRRRVYD ALNVLMAMEI ISKEKKEIQW KGLPKTSIND  300
AEQLKAEKLL LKSRIEKKAS YFQELKEQLV GLQNLVKRNE HIYSSGNIPS GGVSLPFILV  360
FYFLNLFCNK VF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-35203297193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1052510.0BT105251.1 Picea glauca clone GQ02820_D01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.11e-102PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.11e-102PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY23e-89DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D6QZS21e-117A0A0D6QZS2_ARACU; Uncharacterized protein
STRINGXP_010241817.11e-101(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.15e-82Transcription factor DP