PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031427-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 456aa MW: 50476.3 Da PI: 7.5864

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031427-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.7e-08	71	119	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka + + ++Y++sLq PSME_00031427-RA 71 NSHSLAERARREKISERMKFLQDLVPGC----SKVTGKAVMIDEIINYVQSLQ 119 58***********************9....5559**************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-16	66	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-9	66	123	No hit	No description
PROSITE profile	PS50888	14.958	68	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-16	69	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-5	71	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	74	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5	299	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-4	316	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
ITEAVDGLKG MKYKTVEGVK EKDDVKYKVE QNASAKIGEG SPKQAKDNIH TSEPPKEDYI 60 HVRARRGQAT NSHSLAERAR REKISERMKF LQDLVPGCSK VTGKAVMIDE IINYVQSLQR 120 QVQFLSMKLA VVNPRMEFNV EGILPKDSQG SSPTMVFASD TSTSYPQLHQ PQQGLVQIGT 180 EGHGIVNQAE ALRRTINAQI ACIDGYGDVN AQVVLEILSC ETYQVLIQAK AQPIKEEQIT 240 KVVDGLKGMK YKTVEGVKEK DDVKYKVEQN ASAKIGEGSP KQAKDNIQNS EPRKEDYIHV 300 RARRGQATNS HSLVERVTGK AVMLDEIINY VQSLQRQVEF LSMKLAAVNP RMEFNVEGIL 360 AKDMLQSQGS STTMVFSSDT STSYPQLHQP QQGLVQIGTE GHGIVNQDEA LRRTINAQIA 420 CIDGYGDVNA QVIISCRKGG TSIEDLAEKY PDMIIK

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

ITEAVDGLKG MKYKTVEGVK EKDDVKYKVE QNASAKIGEG SPKQAKDNIH TSEPPKEDYI  60
HVRARRGQAT NSHSLAERAR REKISERMKF LQDLVPGCSK VTGKAVMIDE IINYVQSLQR  120
QVQFLSMKLA VVNPRMEFNV EGILPKDSQG SSPTMVFASD TSTSYPQLHQ PQQGLVQIGT  180
EGHGIVNQAE ALRRTINAQI ACIDGYGDVN AQVVLEILSC ETYQVLIQAK AQPIKEEQIT  240
KVVDGLKGMK YKTVEGVKEK DDVKYKVEQN ASAKIGEGSP KQAKDNIQNS EPRKEDYIHV  300
RARRGQATNS HSLVERVTGK AVMLDEIINY VQSLQRQVEF LSMKLAAVNP RMEFNVEGIL  360
AKDMLQSQGS STTMVFSSDT STSYPQLHQP QQGLVQIGTE GHGIVNQDEA LRRTINAQIA  420
CIDGYGDVNA QVIISCRKGG TSIEDLAEKY PDMIIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT113151	0.0	BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257873.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010257874.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010257875.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010257876.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010257878.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010257879.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654187.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654195.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654202.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654208.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Refseq	XP_010654210.1	8e-76	PREDICTED: transcription factor bHLH49 isoform X2
Refseq	XP_010654214.1	7e-76	PREDICTED: transcription factor bHLH49 isoform X3
Refseq	XP_019076890.1	1e-75	PREDICTED: transcription factor bHLH49 isoform X1
Swissprot	Q9CAA9	4e-57	BH049_ARATH; Transcription factor bHLH49
TrEMBL	B8LLM2	3e-88	B8LLM2_PICSI; Uncharacterized protein
STRING	VIT_01s0010g00740.t01	9e-76	(Vitis vinifera)
STRING	XP_010257872.1	4e-75	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	3e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]