PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031530-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 741aa    MW: 82234.1 Da    PI: 6.9981
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031530-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2076131156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++e+e+lF++ ++p++++r++L+kklgL  rqVk+WFqNrR++ k
  PSME_00031530-RA  76 KKRYHRHTPQQIQEMEALFKEFPHPDEKQRQQLSKKLGLAPRQVKFWFQNRRTQLK 131
                       688999**********************************************9877 PP
2START180.11.3e-562564791206
                       HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
             START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                       ela++a++el+k  +aeep+Wv+ +    e ++ +e+ ++f++  +      ++ea r + +v m + + v +l++ + +W et++    +a+
  PSME_00031530-RA 256 ELALAAMDELLKISQAEEPLWVRNPegvmETLDHEEYSREFPRLIGpkpigHRTEATRHTDIVVMKSSTIVDTLINAN-RWMETFPciisRAT 347
                       5899***********************99999*********99888********************************.************** PP

                       EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
             START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                       t++vis+g      galqlm+aelq+lspl p R+ +fvR+++q+ +g w +vdvSvds  ++p +ss+ +++++pSg+l+++++n++skvtw
  PSME_00031530-RA 348 TVDVISNGvggtrnGALQLMYAELQVLSPLLPtREIYFVRFSKQHADGLWGVVDVSVDSLLDNP-DSSLTKCRKRPSGCLLRDMPNNRSKVTW 439
                       ****************************************************************.9*************************** PP

                       EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                       veh +++   +h ++rs+++sg+a+ga++wvatlqrqc++
  PSME_00031530-RA 440 VEHLEYDNVGVHRIFRSIISSGMAFGAQRWVATLQRQCQR 479
                       **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1959134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-2160127IPR009057Homeodomain-like
PROSITE profilePS5007117.28173133IPR001356Homeobox domain
SMARTSM003894.7E-1974137IPR001356Homeobox domain
CDDcd000862.69E-1876134No hitNo description
PfamPF000466.6E-1876131IPR001356Homeobox domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PROSITE profilePS5084840.187247482IPR002913START domain
SuperFamilySSF559617.83E-30250480No hitNo description
CDDcd088757.25E-112251478No hitNo description
PfamPF018521.7E-47256479IPR002913START domain
SMARTSM002341.2E-50256479IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-4344479IPR023393START-like domain
SuperFamilySSF559617.97E-20506731No hitNo description
PROSITE profilePS5084811.249528741IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MPCAPTMAHA RVTASSVKSR TTNNLFSSTG LSLMLPGGGG EGQNRSGHDE DQDYESSENM  60
EGGSGDDIAD LDHPRKKRYH RHTPQQIQEM EALFKEFPHP DEKQRQQLSK KLGLAPRQVK  120
FWFQNRRTQL KATQERHENS LLRQEIEQLR SENVSLRESL RNPICSICGG RGLNGDVMSF  180
DEQQLRHENA RLKDELDRVC ALVEKMSGRP NSSITPASNS SLDLTVGLSG LHSAAMNSTN  240
QRSMVLMGIE RSKVTELALA AMDELLKISQ AEEPLWVRNP EGVMETLDHE EYSREFPRLI  300
GPKPIGHRTE ATRHTDIVVM KSSTIVDTLI NANRWMETFP CIISRATTVD VISNGVGGTR  360
NGALQLMYAE LQVLSPLLPT REIYFVRFSK QHADGLWGVV DVSVDSLLDN PDSSLTKCRK  420
RPSGCLLRDM PNNRSKVTWV EHLEYDNVGV HRIFRSIISS GMAFGAQRWV ATLQRQCQRI  480
AFLMSTNGPT GDLAAVPTPS GRRSLMKLAE RMTNKFCCGV SASSRHTWTK LSSQGTADDD  540
VRVMSRKNVD DPGEPPGVVL SAATSLWLPV SPNRLFDFLR DQRFRSEWDI LSNGCPIEEV  600
THISNGKDRG NRVSVLSAKT SNQSNTLILQ ESCADSYGSM VVYAPVEIPA IHQVMNGNDS  660
VNVALLPSGF VILPEGPPES RSVNVDNQQV EGSLLTIAFQ ILVNDLPTAK LTLESVETVN  720
KLISCTAQRI KAALQKEKED V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1026000.0BT102600.1 Picea glauca clone GQ0197_K07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083470.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D6QVJ60.0A0A0D6QVJ6_ARACU; Uncharacterized protein
STRINGGorai.001G171000.10.0(Gossypium raimondii)
STRINGcassava4.1_001764m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]