PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031639-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 336aa    MW: 35533.2 Da    PI: 9.1302
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031639-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.6e-09132158127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt++C+++     C++Gd+C+FaHg+
  PSME_00031639-RA 132 YKTRICSNYTSAEGCRFGDKCHFAHGE 158
                       9************************96 PP
2zf-CCCH382.8e-12303327126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC ++a+ GtC +GdrC+FaHg
  PSME_00031639-RA 303 FKTKLCENYAK-GTCTFGDRCHFAHG 327
                       69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.66693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6436694IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-66792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-76791IPR000571Zinc finger, CCCH-type
PfamPF146082.47491No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-15125162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9128162IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5131158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037131159IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6132158IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-13210286IPR004088K Homology domain, type 1
SMARTSM003221.7E-10215285IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.8E-14216284IPR004088K Homology domain, type 1
PROSITE profilePS5008413.502216280IPR004088K Homology domain, type 1
PfamPF000135.2E-10218281IPR004088K Homology domain, type 1
CDDcd001053.04E-11220280No hitNo description
Gene3DG3DSA:4.10.1000.108.7E-15300332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8301332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.38302329IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-8302328IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9303327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MLGLEDPMDP FGHARKKARS EAFLNENGGM FNPQESTMFG DGNRFKPGGL TFGSLPEKES  60
LPTGLGSKSK ACTKFFSTSG CPYGEGCHFQ HYVQGGVNPV TQIASLGSAL GTASKKPAGL  120
LPAEQTLNAS NYKTRICSNY TSAEGCRFGD KCHFAHGEKE LAKVNAPAHN LKDDRPTGPF  180
GSRFPVGGLD GKPGGRPVYR EATPPGMAAA ATFGASATAK ISVDAALAGA IIGKGGINSK  240
HICRATGAKL AIRDHESDPN LKNIELEGSF DKIKEASAMV RQLIMHTTAI LPAKQPSFAT  300
NNFKTKLCEN YAKGTCTFGD RCHFAHGAGE MRDNSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1183560.0BT118356.1 Picea glauca clone GQ04005_H21 mRNA sequence.
GenBankEF6772780.0EF677278.1 Picea sitchensis clone WS02764_K08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-108PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-91C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB8LN830.0B8LN83_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-107(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-40C3H family protein