PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031843-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 400aa    MW: 45933 Da    PI: 5.7028
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031843-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.95.3e-42201463128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       pGfrF Pt+eel+++yLkk+v+g + l+l+ +i++v++y+++Pw+Lp   ++ +e++w+fF++rd++++   r++r+t sgyWkatg+d++v 
  PSME_00031843-RA  20 PGFRFYPTEEELLSFYLKKRVTGCDqLNLDIIIPTVQLYHYDPWELPgLVHYVGERQWFFFVPRDHNKS-CPRPTRMTVSGYWKATGSDRPVR 111
                       9********************99875777667***************656677999*********9876.68********************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  + +glkk+Lvfykg+ap g++tdW+m+eyr+
  PSME_00031843-RA 112 NELLQSIGLKKILVFYKGKAPCGQRTDWIMNEYRM 146
                       *99999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-4517167IPR003441NAC domain
PROSITE profilePS5100548.9818167IPR003441NAC domain
PfamPF023652.1E-2220146IPR003441NAC domain
SMARTSM003503.2E-678356IPR031327Mini-chromosome maintenance protein
PfamPF004935.9E-17236354IPR001208MCM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006260Biological ProcessDNA replication
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MQEEIYNDWK VKGEEIMDLP GFRFYPTEEE LLSFYLKKRV TGCDQLNLDI IIPTVQLYHY  60
DPWELPGLVH YVGERQWFFF VPRDHNKSCP RPTRMTVSGY WKATGSDRPV RNELLQSIGL  120
KKILVFYKGK APCGQRTDWI MNEYRMPDSR LSAPKKTDIV LCRIYRKAAS NKSMGHLATQ  180
DYFDKEEPVV SGDNYGEKSH SVTLDHDSYQ LSNPVEKSDV FSLHYNVDDE GVGSSDPADM  240
DSDLEMARNV LYVPQKCEPP ALDFTPLESS ILRAYIAATR RISPSLPKDL TEYIASAYSS  300
MRQGEAQSDA PHSYTTSRTL LRILCISMAL SRLRFSETVA QSDVDEALRL MQMSKFSLYA  360
DERKKTGLDA IFDIYSIIRD EASRMNTMDA RYANALNWIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-412017019168NO APICAL MERISTEM PROTEIN
1ut4_B3e-412017019168NO APICAL MERISTEM PROTEIN
1ut7_A3e-412017019168NO APICAL MERISTEM PROTEIN
1ut7_B3e-412017019168NO APICAL MERISTEM PROTEIN
4dul_A3e-412017019168NAC domain-containing protein 19
4dul_B3e-412017019168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1036070.0BT103607.1 Picea glauca clone GQ0258_P11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A075M5N51e-115A0A075M5N5_9SPER; NAC domain protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.13e-54NAC domain containing protein 35