PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00031878-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 386aa MW: 41959.4 Da PI: 6.2826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00031878-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.8e-05	342	377	5	45
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 h+++Er R+ri +++ L+el+P++ K + a++Le PSME_00031878-RA 342 HSIAERLHRERIAERMKVLQELVPNS-----NKTDNASMLE 377 99***********************7.....3666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-8	335	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.443	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.62E-5	341	377	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-6	341	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MQPSTSLLGT GPVQSMSSVT SCLSSSPEVA LQEQMHSQHQ QQHFSSQFDQ TNQPHQNMED 60 FLEQMFLMPS WSDVAVKTAP WEFNPANASQ SNNASNNNNS PQNLQSNTQR LFTMPLLPFG 120 IGGQCLNSQE NEGHTGEHMQ YSNYDESQFL ASRLRQHPLS SNSSMNQMPN QVSQGINETN 180 TSPGRSMVLQ LSTGNVTASQ LLASMGNSPR GAAVMAQSPS TGDSCNGSDG GMLPLPLSLD 240 QAGKSSEMNE TQSRDEIEAS FKSANNARDS NLRGLFPPFV GSPRGVRPLG QNFHSQSGQV 300 PMQGYGGMPQ PQHQNPPPTG VGAAPPVRPR VRARRGQATD PHSIAERLHR ERIAERMKVL 360 QELVPNSNKT DNASMLESSS MDIIFI

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MQPSTSLLGT GPVQSMSSVT SCLSSSPEVA LQEQMHSQHQ QQHFSSQFDQ TNQPHQNMED  60
FLEQMFLMPS WSDVAVKTAP WEFNPANASQ SNNASNNNNS PQNLQSNTQR LFTMPLLPFG  120
IGGQCLNSQE NEGHTGEHMQ YSNYDESQFL ASRLRQHPLS SNSSMNQMPN QVSQGINETN  180
TSPGRSMVLQ LSTGNVTASQ LLASMGNSPR GAAVMAQSPS TGDSCNGSDG GMLPLPLSLD  240
QAGKSSEMNE TQSRDEIEAS FKSANNARDS NLRGLFPPFV GSPRGVRPLG QNFHSQSGQV  300
PMQGYGGMPQ PQHQNPPPTG VGAAPPVRPR VRARRGQATD PHSIAERLHR ERIAERMKVL  360
QELVPNSNKT DNASMLESSS MDIIFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115043	0.0	BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-17	LJRHL1-like 1