PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031887-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 359aa    MW: 40303.1 Da    PI: 7.9102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031887-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.2e-091132527
                      --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                      +C+f+++ G C+yG+rC+F H++
  PSME_00031887-RA 11 PCKFWMA-GNCHYGNRCRFLHSR 32
                      8******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.943633IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4732IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-71132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-71132IPR000571Zinc finger, CCCH-type
SMARTSM003561976100IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.00580103IPR000571Zinc finger, CCCH-type
SMARTSM003200.0045105144IPR001680WD40 repeat
SuperFamilySSF509782.88E-36105358IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.7E-34107357IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.092109144IPR001680WD40 repeat
PROSITE profilePS5029421.436112359IPR017986WD40-repeat-containing domain
PROSITE profilePS5008210.943112153IPR001680WD40 repeat
PROSITE patternPS006780131145IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-5131145IPR020472G-protein beta WD-40 repeat
SMARTSM003204.7186225IPR001680WD40 repeat
SMARTSM003200.058232269IPR001680WD40 repeat
PROSITE profilePS5008211.778239278IPR001680WD40 repeat
PfamPF004000.043241269IPR001680WD40 repeat
PRINTSPR003201.3E-5256270IPR020472G-protein beta WD-40 repeat
SMARTSM003201.5E-5272309IPR001680WD40 repeat
PfamPF004001.4E-4274308IPR001680WD40 repeat
PROSITE profilePS500829.406279308IPR001680WD40 repeat
PRINTSPR003201.3E-5296310IPR020472G-protein beta WD-40 repeat
SMARTSM00320310313356IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MCRYNRDCRI PCKFWMAGNC HYGNRCRFLH SRTNMPNSVQ DVAISSYKYQ RVMDNTQIPM  60
TKRHDGNEKS SATVINFNYP CKLWLEGKHC NEQCRCLHSH ASGVGVNFVA QLSGHLKAII  120
GIALPSNSSK LYSVSCDQIM RIWDCHTGKC EEAIKIEQEI GCISSEGSWI FLGIPNEVKV  180
WDSNTSFNYS LKCPITTGQV NALAVVSEKK MLLAGTQNGH VLMWKFNSTQ NSFEFWKAVS  240
SHNKAVVTLV VASGRFYTGS MDKTIKVWDI ESCQCLHTLI SHSDTVTSLT CWKDYLFSCS  300
LDGTIKVWVT TVHGSVEVTY THAVNQVVIS FCGVHDDKAN PVLMCTNSDN SVCIYQLPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-13873081320Tako8
6g6n_A2e-13873081320Tako8
6g6n_B2e-13873081320Tako8
6g6n_C2e-13873081320Tako8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-92zinc finger WD40 repeat protein 1