PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00031957-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 337aa    MW: 38391 Da    PI: 5.5257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00031957-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19165216256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrd s    + +r +lg+f taeeAa a+++a++k++g+
  PSME_00031957-RA 165 HYRGVRRRP-WGKFAAEIRDSSR---QgARMWLGTFETAEEAALAYDKAALKMRGA 216
                       8********.**********422...24**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-30164224IPR001471AP2/ERF domain
CDDcd000182.15E-30164223No hitNo description
SuperFamilySSF541711.63E-22165224IPR016177DNA-binding domain
PfamPF008473.8E-14165215IPR001471AP2/ERF domain
PROSITE profilePS5103223.512165223IPR001471AP2/ERF domain
SMARTSM003805.0E-36165229IPR001471AP2/ERF domain
PRINTSPR003671.2E-10166177IPR001471AP2/ERF domain
PRINTSPR003671.2E-10189205IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVGQQQQVGQ SERLLENVWA RIVGEARSDE ELEGSHVSSG NHDKISESSS IKKSQKPQIR  60
WKLDTIEEGF DVKSDSNDPS QSVISTHEFN KFLERLPSLR RWLSMESEAL NFLPNEVESQ  120
FSLECDSKKE DADERRSSAA EKTVTAPPKF EKERLQRASQ PAKKHYRGVR RRPWGKFAAE  180
IRDSSRQGAR MWLGTFETAE EAALAYDKAA LKMRGARTFL NFPLHVVAEA LSKDLKTSYV  240
SLSDFNSLTD DDSTLMFRKR PGGLLSETFQ PPPKQINSQF RQCRLDHEDH IFPVYDQISA  300
DSQGMLDKQC VLETGFEEWL LNATESCMSS LDFPPMC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-30164226163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.17e-22ethylene responsive element binding factor 2