PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032088-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 306aa    MW: 34571.3 Da    PI: 4.459
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032088-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.2e-1887140356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t eq+++Le+ Fe+ +++  e++ +LAk lgL+ rq+ vWFqNrRa++k
  PSME_00032088-RA  87 KKRRLTLEQVRALEKNFEMANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWK 140
                       45689************************************************9 PP
2HD-ZIP_I/II127.17.8e-4186177192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+ eqv++LE++Fe+ +kLepe+K++la++Lglqprq+avWFqnrRAR+ktkqlEkd++ L++ yd++k++ ++L +e+++L++ ++
  PSME_00032088-RA  86 EKKRRLTLEQVRALEKNFEMANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWKTKQLEKDFNILRQDYDTMKQDYDSLMEENNNLQAVIE 177
                       69*************************************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
SuperFamilySSF466891.67E-1978144IPR009057Homeodomain-like
SMARTSM003893.6E-1785146IPR001356Homeobox domain
PROSITE profilePS5007116.84486142IPR001356Homeobox domain
CDDcd000861.24E-1687143No hitNo description
PfamPF000466.7E-1687140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1989148IPR009057Homeodomain-like
PRINTSPR000311.7E-5113122IPR000047Helix-turn-helix motif
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5122138IPR000047Helix-turn-helix motif
PfamPF021831.8E-13142184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MACDRSALYP SNVIMNTEDN SSANAIAAMI ASSCTPTATF QGTRSMSVFE NGNERKRSAG  60
NSYSALELSD DIGDEDGSDD CIHLGEKKRR LTLEQVRALE KNFEMANKLE PEKKMQLAKA  120
LGLQPRQIAV WFQNRRARWK TKQLEKDFNI LRQDYDTMKQ DYDSLMEENN NLQAVIERLR  180
SKTQSCNDQK FQANSSKLQE DDQDLPLLMI SATAVDCANK ENNNEGPSSI GSEGSSVLDM  240
DSPGTTESQQ NIDSIGFSNV KARDPRLECN FRPKVEENLS QADEPCNYLF YNNLEPCPLL  300
WEYNWA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2011700.0DQ201170.1 Picea glauca homeobox-leucine zipper-like protein mRNA, complete cds.
GenBankEF0851910.0EF085191.1 Picea sitchensis clone WS02717_F10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NV370.0A9NV37_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-42homeobox 3