PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032194-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 221aa    MW: 24378.1 Da    PI: 7.7957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032194-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.71.6e-14126176255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r+++ +g++ AeIrdp +n    r +lg+f taeeAa a+++a  +++g
  PSME_00032194-RA 126 HYRGFRQRP-WGKFKAEIRDPAKN--DNRAWLGTFNTAEEAALAYDHAVFRIRG 176
                       79*******.**********9775..39***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.6E-29125184IPR001471AP2/ERF domain
PfamPF008472.7E-8126176IPR001471AP2/ERF domain
CDDcd000183.08E-27126184No hitNo description
PROSITE profilePS5103222.84126184IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-21126185IPR016177DNA-binding domain
SMARTSM003802.1E-31126190IPR001471AP2/ERF domain
PRINTSPR003671.1E-9127138IPR001471AP2/ERF domain
PRINTSPR003671.1E-9150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNGLSSSMNM NMLELIRHHL LEVEDIDEQG SSSQLSFSAN GNGNGSAVYF NIAADDIQAN  60
PIIAGGPSQN SSSSITTLQE NQKYYSSSNS NSVCSVLITA EAFKVKSLPH EEQENAKMKQ  120
YISARHYRGF RQRPWGKFKA EIRDPAKNDN RAWLGTFNTA EEAALAYDHA VFRIRGSRAL  180
LNFPLAFAFA SNSEKGSAIG HMAHKRKRLN SGGEATEWTL D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-31125185464ATERF1
3gcc_A3e-31125185464ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028762733.12e-32ethylene-responsive transcription factor 1A-like
TrEMBLA0A023ZYJ71e-55A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-28ethylene responsive element binding factor 1