PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00032227-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 582aa MW: 63948.1 Da PI: 9.6428

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00032227-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	246	291	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR++++++fe L + lP + + +Ka+iL A+eY+ sL PSME_00032227-RA 246 HHTISERRRREKLKESFEALSSFLPGC-----SRKDKASILAYAMEYLTSL 291 79**********************9.....6889**********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.811	242	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.62E-10	244	292	No hit	No description
SuperFamily	SSF47459	1.44E-15	244	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-16	246	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-8	246	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-11	248	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MAGCRVPGLA LNRPPYVWLT ANELVFFSSN ESQDEFYKVE VNEQNNLRIS SLLATVISIL 60 NIPGTTISTS SCSSLLSRSI KSSEGSSMDS YILQDPAIST GRDQINIPAD THQYSMASGI 120 YPYLQTLQLP STSALFTSCG HDRETTLIYP GSSHQINIPD LLFSPQISKA SGFPCVFPPE 180 SNIMLSAFGM WRPPSKLPTA PMVEGQYRLK RGLAILRNIH VQRLRQISLS GSYRPPGGTT 240 SSGQVHHTIS ERRRREKLKE SFEALSSFLP GCSRKDKASI LAYAMEYLTS LKSRGEELEE 300 RNKQLESESK KLPQAQSQEG AQLESELKKL RRTQSQEAEG TSTALQQQGC TISEGGDSVV 360 SVEVWKMGDS TATTCNEMGI SVVVEKPTNT IDSVIAVLKR LREMGVPLIS MASATSSADH 420 ELRDPSRLQF RLTATINLKD DEVERVKEGL VNAARNDGGP PPGGNPSQAA KPQNHRPLQK 480 PHHVSRTDNK TLQGKGPAKK IAEKVNKSET LKNGHTKKQS LHRIEGTNRI SRKKNPRLIV 540 IPQDPGEKGY TIAGHGRGYN QHSDTGSAER RRNPQSPSES HC

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MAGCRVPGLA LNRPPYVWLT ANELVFFSSN ESQDEFYKVE VNEQNNLRIS SLLATVISIL  60
NIPGTTISTS SCSSLLSRSI KSSEGSSMDS YILQDPAIST GRDQINIPAD THQYSMASGI  120
YPYLQTLQLP STSALFTSCG HDRETTLIYP GSSHQINIPD LLFSPQISKA SGFPCVFPPE  180
SNIMLSAFGM WRPPSKLPTA PMVEGQYRLK RGLAILRNIH VQRLRQISLS GSYRPPGGTT  240
SSGQVHHTIS ERRRREKLKE SFEALSSFLP GCSRKDKASI LAYAMEYLTS LKSRGEELEE  300
RNKQLESESK KLPQAQSQEG AQLESELKKL RRTQSQEAEG TSTALQQQGC TISEGGDSVV  360
SVEVWKMGDS TATTCNEMGI SVVVEKPTNT IDSVIAVLKR LREMGVPLIS MASATSSADH  420
ELRDPSRLQF RLTATINLKD DEVERVKEGL VNAARNDGGP PPGGNPSQAA KPQNHRPLQK  480
PHHVSRTDNK TLQGKGPAKK IAEKVNKSET LKNGHTKKQS LHRIEGTNRI SRKKNPRLIV  540
IPQDPGEKGY TIAGHGRGYN QHSDTGSAER RRNPQSPSES HC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	255	ERRRRE
2	251	256	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-06	bHLH family protein