PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032293-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 756aa    MW: 84556.3 Da    PI: 4.4497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032293-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.87.9e-17167214259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ ++++ prsYY+C          v+r+a+dp++v++tYegeH+h+
  PSME_00032293-RA 167 NDGCHWRKYGQKNTRNNTRPRSYYKC----------VQRCAQDPTIVITTYEGEHTHP 214
                       8*************************..........899******************7 PP
2WRKY90.51.3e-28455513259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ ++++ prsYY+C +a gCpvkk+v+r+a+dp++v++tYegeH+h+
  PSME_00032293-RA 455 NDGCHWRKYGQKNTRNNTRPRSYYKCVMApGCPVKKQVQRCAQDPTIVITTYEGEHTHP 513
                       8**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-20153214IPR003657WRKY domain
SuperFamilySSF1182903.01E-19158215IPR003657WRKY domain
PROSITE profilePS5081118.957161216IPR003657WRKY domain
SMARTSM007742.8E-20166215IPR003657WRKY domain
PfamPF031066.1E-14167214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-31441513IPR003657WRKY domain
SuperFamilySSF1182904.32E-26446514IPR003657WRKY domain
PROSITE profilePS5081126.544449515IPR003657WRKY domain
SMARTSM007746.4E-33454514IPR003657WRKY domain
PfamPF031065.0E-25455513IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MKLWSYLCFK MTVLVDKINL VKEENMKLSF TLKRMISKYD DLRKHIRFLA QKRGVDGSQV  60
FNPDRSGEEL LYARYSSGAV SHQSDMCGDC PKRGREKEKS SRLIGDQQLP SKKRKIENGS  120
TSSPCCDEKS SKKQQHQVPT DGSREQTAAA PKRTVSVQTR SETSVINDGC HWRKYGQKNT  180
RNNTRPRSYY KCVQRCAQDP TIVITTYEGE HTHPLSPLAM SVMHSSSSNQ LINEGLSTVN  240
FLTDNQFIPI SRITTSGLCP TITLDLTDNC PNPGLQLQPA HLEAGSFQQT PLSNDLGQMT  300
VLVDKINLVK EENMKLSFTL ERMISKYNDL RKHIRFLARN RGVDGSQVFN PDHSGQELLY  360
ARYSSGAVSH QSDMCGDCHK RGREKEKSTR LIGDQQLQSK KRKIENGSTS SPCCDEKSSK  420
KQHHQVPSGG SREQTAAAPK RTVSVRTRSE TSVINDGCHW RKYGQKNTRN NTRPRSYYKC  480
VMAPGCPVKK QVQRCAQDPT IVITTYEGEH THPLSPLAMS VMHSSSSNQL INEGLNTVNF  540
LTDNQFIPIS RITMSSLCPT ITLDLTDNCP NPGLQLQPAH LEAGSFQQTP LSNDLSQVLD  600
HDQNQLDNYS SIMQESVASI LKGDPNFTEA LTVAIAGSLF NLGAPFEKTK INSFVGNDDE  660
GDEEEEEEEE EEDVGGDDED DDDDDDDDND DEEEDDHYDD DDVHEGDDDG DHDGDDEDEG  720
DDEDADGDDD DDDDDGDNED DDGDDDDDDD DDADEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-20157514876Probable WRKY transcription factor 4
2lex_A9e-20157514876Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-113A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-37WRKY family protein