PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032403-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family E2F/DP
Protein Properties Length: 551aa    MW: 60418.3 Da    PI: 9.6978
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032403-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP421.6e-1357903871
           E2F_TDP 38 dvknkrRRiYDilNVLealnliekkekneirwkg 71
                      +v  +rRRiYDi+NVLe+++++ +k+kn+++wkg
  PSME_00032403-RA 57 EVSVERRRIYDIVNVLESVGVLVRKAKNRYTWKG 90
                      34459***************************98 PP
2E2F_TDP70.32.2e-22194277171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                       r+eksL+lltqkf++l+  +++++v+l+++a+ L+ e        + k k+RR+YDi+N+L++lnliek     ++k+++rw g
  PSME_00032403-RA 194 RREKSLGLLTQKFVQLFLVTQAQVVSLEDAARLLLGEckesaklkSKKSKVRRLYDIANILSSLNLIEKthnteNRKPAFRWLG 277
                       689*****************************************988899*******************9999999******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.6E-72090IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.56E-95691IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-125791IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.3E-115790IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.7E-24190279IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-32194277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.7E-19196277IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.97E-12196278IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MKSLKVSSLQ TRLQDLLNIS GTGRLKLSVQ NVVIWGSGLQ SSDLQPEGEI ARLAVCEVSV  60
ERRRIYDIVN VLESVGVLVR KAKNRYTWKG YEGIPKALEK LREAALNGEV LIGVKDLSDL  120
SEIKMNNVRV CLASDDEEEE HSSNENSCPL ENVKRQGKRP LNKSSPVSVL METSKGSPKS  180
KAGFRIFHQS ADCRREKSLG LLTQKFVQLF LVTQAQVVSL EDAARLLLGE CKESAKLKSK  240
KSKVRRLYDI ANILSSLNLI EKTHNTENRK PAFRWLGVKD NAKYTAEMVT KKRQFGTVLS  300
TNTNIPSVPK AKRGRPSNKD GFESQNQPLN GAKSSPILKP LQPRCTNVAG AVYNPVPVYP  360
REGSAIPISG MATSTPGVPT SLTLGTSGGG WREWTTADSH RVSEHKGNDS AAAGVGFSTR  420
LKPSGLTRPG FSSRNRDCPA GFSFGPFCPF RLQQQCLASF YPAQGLDRSN DRPDENQDRE  480
GSSQESEVTN PFTLHYQNEA MDQMFAHCMN AWKSWYLQAA VTATANATSV SSPVPSGHDP  540
SDSVTEATET T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A9e-315726940228Transcription factor E2F8
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.15e-48DP-E2F-like 1