PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00032477-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 405aa MW: 44100.1 Da PI: 5.0634

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00032477-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	106	150	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ E++l++d++ qlG++ W++Ia++++ gRt++++k++w+++ PSME_00032477-RA 106 RGVLSESEEQLIIDLHSQLGNR-WSKIAAHLP-GRTDNEIKNYWNTH 150 677899**************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.275	76	100	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	3.8E-5	86	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-21	87	160	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-25	100	156	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.846	101	155	IPR017930	Myb domain
SMART	SM00717	1.5E-16	105	153	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	106	150	IPR001005	SANT/Myb domain
CDD	cd00167	3.45E-13	110	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MRGRGQGQGQ GQGRSVEGKG NVLGAGQRAE PSTPSSLLTV SQSPDISTAY SDNISPLFLR 60 CSVHVASVGC TRGREARRLE NAGRLLRCGK SCRLRWTNYL RPDLKRGVLS ESEEQLIIDL 120 HSQLGNRWSK IAAHLPGRTD NEIKNYWNTH IKKKLKRMGI DPVTHRPIID QTESKPSIAA 180 LNEATEELSG SSPTKKAILQ AVAEVSCRSN ESEITEEAEK SIDSVKAVKH EAAQLATGYG 240 FDSNPTLFDE RSSTIYLCDL PVAETPNLDN SGLDFVGNTV LRGASDDQSL LEFAEDMVPG 300 IISGPLKSQE GLNDELALIN PCSSFNVPIE TSTSNSADQE LQWPNDVSNA APPANNYDIL 360 LGGPASIPET DMQLWHIEHL QSAFDAGWDI HHSANNAIFS NPLFF

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MRGRGQGQGQ GQGRSVEGKG NVLGAGQRAE PSTPSSLLTV SQSPDISTAY SDNISPLFLR  60
CSVHVASVGC TRGREARRLE NAGRLLRCGK SCRLRWTNYL RPDLKRGVLS ESEEQLIIDL  120
HSQLGNRWSK IAAHLPGRTD NEIKNYWNTH IKKKLKRMGI DPVTHRPIID QTESKPSIAA  180
LNEATEELSG SSPTKKAILQ AVAEVSCRSN ESEITEEAEK SIDSVKAVKH EAAQLATGYG  240
FDSNPTLFDE RSSTIYLCDL PVAETPNLDN SGLDFVGNTV LRGASDDQSL LEFAEDMVPG  300
IISGPLKSQE GLNDELALIN PCSSFNVPIE TSTSNSADQE LQWPNDVSNA APPANNYDIL  360
LGGPASIPET DMQLWHIEHL QSAFDAGWDI HHSANNAIFS NPLFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-20	87	155	40	108	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106711	0.0	BT106711.1 Picea glauca clone GQ03008_L22 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	2e-50	myb domain protein 20