PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032560-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 239aa    MW: 26101.8 Da    PI: 8.6449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032560-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08159183730
                       HHHHHHHHHHHHHHHHHHCTSCC.C CS
               HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                       ++ErrRR+++N++++ Lr+++Pk +
  PSME_00032560-RA 159 MAERRRRKKVNDRLFMLRSVVPKvS 183
                       79********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-7147188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.765152216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5158183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-5159187No hitNo description
Gene3DG3DSA:4.10.280.101.2E-6159193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAMEMAWTGL LDESFSSFRA ILNGGGEYDF YSTMDANEMA LEALLGSSLM CPDGSVLSNV  60
QTKTIDAFHH MECSITTIAE MLEHPNQGSD ELGLLQRRAE IESRFHKNEG SHKLNGMVGG  120
SRGNASHAAN NNNNNGYASA TSVGRGRGRK TGLPAKNLMA ERRRRKKVND RLFMLRSVVP  180
KVSKVNMREG KALNIHMFCS KKAGMLLSTI NALDGVGLDV KQAIISCFNG FALEVLQVE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1043591e-35BT104359.1 Picea glauca clone GQ02809_I03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673396.14e-43transcription factor ICE1-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.16e-22bHLH family protein