PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032678-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 649aa    MW: 70188.4 Da    PI: 6.5122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032678-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.61.1e-32291347259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++v+ei+Y+g+H h+
  PSME_00032678-RA 291 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPKCPVKKKVERSH-DGQVTEIVYKGDHSHS 347
                       8****************************************.***************7 PP
2WRKY102.13.2e-32493551159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct  gC+v+k+ver+++d ++v++tYeg+Hnh+
  PSME_00032678-RA 493 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCSVRKHVERASTDVRAVITTYEGKHNHD 551
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.63285349IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-29286347IPR003657WRKY domain
SuperFamilySSF1182902.62E-25287348IPR003657WRKY domain
SMARTSM007743.0E-36290348IPR003657WRKY domain
PfamPF031063.0E-25291346IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-36478553IPR003657WRKY domain
SuperFamilySSF1182901.44E-28485553IPR003657WRKY domain
PROSITE profilePS5081137.918488553IPR003657WRKY domain
SMARTSM007741.0E-37493552IPR003657WRKY domain
PfamPF031065.9E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MEGKESAITA EDRGRGGGAV IWRPSSSSSS SSRPRLSLPL RLSSIEEQAL YVKGSPGPMT  60
TLFSSLISDH VDPDPDTDSE CRSFSQLLAG AMSSPNAHPT AASAMMMMMM YSPSEATLGA  120
QNNTFDDGGA GGLGNASGNG RGLRGFKSST PTSIPIPMSP FFTVPAGFSP TMLLDSPGFL  180
SGGQGPFGIS HQQVLAQVQA QAQVQALPQM QVQASSYAPL MPSTSTAIMP LQMEYTAATD  240
DNTYGTSRQQ TMPAQPESNK AIGCPELVSQ TNESDQRSLP PIHPVAERPS DDGYNWRKYG  300
QKQVKGSEYP RSYYKCTHPK CPVKKKVERS HDGQVTEIVY KGDHSHSPKP QSSRRMANAA  360
QQYLSAQDGR YASHGSDHDD KNGILDGKTD GSFQLFSGDP RGRRGINTNI SDPSTSAREH  420
DVGQRSAEQL CGSSDDGEDD DQVSRLDNAD DDDEELDAKR RKKEENIKEI VALNRTIKEP  480
RVVVQTTSDV DILDDGYRWR KYGQKVVKGN PHPRSYYKCT NVGCSVRKHV ERASTDVRAV  540
ITTYEGKHNH DVPAPRNSSH DSAGPGSQFH AGNNAVTSCS LPKPSTISLL EQQAGNCPSS  600
SAWTLESRTE GQDMNSRAKE GAIPLSTLKP KEEHDTTSVA TGFYYTVGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37291554878Probable WRKY transcription factor 4
2lex_A2e-37291554878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697650.0EU269765.1 Pinus monticola WRKY transcription factor PmWRKY117 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QXK81e-180A0A0D6QXK8_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.18e-92WRKY DNA-binding protein 4