PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00032791-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 361aa    MW: 39867.2 Da    PI: 6.5116
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00032791-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-17202256256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PSME_00032791-RA 202 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 256
                       778899***********************************************98 PP
2HD-ZIP_I/II127.74.9e-41202291191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+y++l+een+rL+k+ +eLr +l
  PSME_00032791-RA 202 RKKLRLSKEQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYETLTEENRRLQKDIQELR-AL 291
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-837157IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.605.0E-17189256IPR009057Homeodomain-like
SuperFamilySSF466891.63E-18194259IPR009057Homeodomain-like
PROSITE profilePS5007117.313198258IPR001356Homeobox domain
SMARTSM003891.5E-15200262IPR001356Homeobox domain
PfamPF000464.1E-15202256IPR001356Homeobox domain
CDDcd000863.66E-16202259No hitNo description
PROSITE patternPS000270233256IPR017970Homeobox, conserved site
PfamPF021831.8E-10258292IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.4E-24258301IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MELGLGLGSE DVVVQPAKSW IQFQQMTSVT KADHVQNTGL VLRLGLELGS QRLNAANPNP  60
PIQLDLLPSA PVPRGFSWHP NTKMYRPPVS ENGGNCEGDY GESRSCGQGV GAAASASSPR  120
GFDVNQVPSS ADNDNDNDND DDDDAVVSSP NSTISSFQMD FGISNATSAV KRERDGDNNA  180
NDHELDRACS RASDEEDGST TRKKLRLSKE QSAYLEESFK EHNTLNPKQK LALAKQLNLR  240
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC YETLTEENRR LQKDIQELRA LKVAHPSFYM  300
HLPATTLTMC PSCERIASAS LPLPPDNNTK GLHGHGPSPS SWPTLASAHL RTTRPAPRLE  360
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206TRKKLRL
2250258RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0852290.0EF085229.1 Picea sitchensis clone WS0271_I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849539.11e-104homeobox-leucine zipper protein HOX11
SwissprotQ67UE23e-84HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA9NV750.0A9NV75_PICSI; Uncharacterized protein
STRINGERN111201e-103(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-64homeobox from Arabidopsis thaliana