PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033011-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 167aa    MW: 19474.7 Da    PI: 7.0335
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033011-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-091041372255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps++e+  LA+ +gL+++q+ +WF N+R ++
  PSME_00033011-RA 104 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 137
                       58*****************************985 PP
2ELK32.12.6e-115578122
               ELK  1 ELKhqLlrKYsgy..LgsLkqEFs 22
                      ELK++L+rKYsgy  L+sLkqEF+
  PSME_00033011-RA 55 ELKNHLRRKYSGYgfLSSLKQEFM 78
                      9**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.4E-75578IPR005539ELK domain
SMARTSM011884.8E-55578IPR005539ELK domain
PROSITE profilePS5007111.64577140IPR001356Homeobox domain
SMARTSM003891.3E-1179144IPR001356Homeobox domain
SuperFamilySSF466898.13E-1980154IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2782142IPR009057Homeodomain-like
CDDcd000865.93E-1189141No hitNo description
PfamPF059207.2E-1697136IPR008422Homeobox KN domain
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MNDRATSAKK EIADLEQAEN DEKREGGGSS EEVDYGSGGE TDSQEVDHHA VEDRELKNHL  60
RRKYSGYGFL SSLKQEFMKT KKKGKLPKDA RQKLLDWWSL HDKWPYPSET EKIALAECTG  120
LDQKQINNWF INQRKRHWKP SEDMHFMVMN SHSPHSAALY VERHLMT
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1054971e-179BT105497.1 Picea glauca clone GQ02823_G18 mRNA sequence.
GenBankPMU900911e-179U90091.1 Picea mariana homeobox transcription factor SKN1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285521.15e-62PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041356e-59KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLQ9ZR912e-88Q9ZR91_PICMA; Homeobox transcription factor SKN1
STRINGVIT_18s0001g08380.t012e-61(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-58KNOTTED-like from Arabidopsis thaliana