PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033033-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 428aa    MW: 47779.1 Da    PI: 5.6122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033033-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-142978148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l+ ++ + G+   +W+ +ar+ g+ R++k+c++rw +yl
  PSME_00033033-RA 29 KGLWSPEEDEKLITYIMKKGMLgcSWTYVARRAGLQRCGKSCRLRWINYL 78
                      678*****************999*************************97 PP
2Myb_DNA-binding452.5e-1484128147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++++E++l+++++  lG+  W  Ia+ ++ gRt++++k++w+++
  PSME_00033033-RA  84 RGSFSQQEEQLIIQLHSILGNS-WCQIAASLP-GRTDNDIKNYWNSF 128
                       899*****************99.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5232478IPR017930Myb domain
SuperFamilySSF466895.72E-2627125IPR009057Homeodomain-like
SMARTSM007173.5E-82880IPR001005SANT/Myb domain
PfamPF002492.1E-122978IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-213085IPR009057Homeodomain-like
CDDcd001671.78E-83278No hitNo description
PROSITE profilePS5129424.43379133IPR017930Myb domain
SMARTSM007172.6E-1583131IPR001005SANT/Myb domain
PfamPF002495.6E-1384127IPR001005SANT/Myb domain
CDDcd001676.24E-1186129No hitNo description
Gene3DG3DSA:1.10.10.608.7E-2486132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGYTQLGQGQ RVRESLIPQP PSKLQKLRKG LWSPEEDEKL ITYIMKKGML GCSWTYVARR  60
AGLQRCGKSC RLRWINYLRP DIKRGSFSQQ EEQLIIQLHS ILGNSWCQIA ASLPGRTDND  120
IKNYWNSFIK KKKLKQTLDS LSTNRNTKCD IASDCDPTCN SKSVSGQPPA RDVFTSFHLA  180
PQQLDAAMDE GYKLDDSTFN GVTNAESQSW IDCIPAHDHE CLSANAFASP RLEEQGQAYK  240
TEESAYRQII NSWSSTQTQL PREADSSSGI SSTAWSTRNP YSIAADCTTG AYTASDLRGI  300
SNLEDYKSLH ENSTLHQACP PLNSCSQLSG PAIMWTDVDQ YCNDQAQVQV QHDYNDRVNL  360
KQISYQASHI GGLQDCSTLP SDGPLEFECE GEAGQEATLC AQYDDPVYNI LAHTTASHLY  420
QTYFTASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27271325107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA5JYE82e-57A5JYE8_PICGL; R2R3-MYB transcription factor MYB4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.16e-54myb domain protein 50