PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033041-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 236aa    MW: 26125.1 Da    PI: 5.6563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033041-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18148199256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+++AeIrdp++ g   r++lg+f+ta+eAa a+++a+ +++g+
  PSME_00033041-RA 148 HYRGVRRRP-WGKFAAEIRDPVKKG--SRIWLGTFDTAQEAAVAYDRAAYRIRGA 199
                       7********.**********76643..*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-31147206IPR001471AP2/ERF domain
SMARTSM003801.3E-34148212IPR001471AP2/ERF domain
PfamPF008474.2E-12148198IPR001471AP2/ERF domain
CDDcd000181.18E-31148206No hitNo description
PROSITE profilePS5103224.329148206IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-23148207IPR016177DNA-binding domain
PRINTSPR003677.9E-11149160IPR001471AP2/ERF domain
PRINTSPR003677.9E-11172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEMKQSECEL SEEMLVSEGE IKNINKNMLE LIRHHLLEVE DDIDLTVEGG NSSSLFSPTD  60
SGVSANLDDL DNDGIRASVH IDDLDNDGIQ SKATAAMASC QNSSSRPISK GNENEIRKPD  120
CSSDCSYFLK VKPHEDNSGE MKQIWARHYR GVRRRPWGKF AAEIRDPVKK GSRIWLGTFD  180
TAQEAAVAYD RAAYRIRGAK ALLNFPLAIA SNSEKGSGGG HMGHNKKRGR EEVVEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-32147209163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00572DAPTransfer from AT5G61600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A023ZYJ77e-80A0A023ZYJ7_9SPER; Ethylene responsive factor 1-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.11e-34ethylene response factor 104