PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033079-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 124aa    MW: 13554.2 Da    PI: 4.8008
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033079-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26054.14.5e-17439747101
            DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                       k++  e+r+da+ss+vyeA+a +rdPvyG++gv+ +lqqql+ l+++la +++++
  PSME_00033079-RA  43 KDVASEHRDDAVSSMVYEARATLRDPVYGCAGVVCRLQQQLCDLQSQLAIAQAQI 97 
                       678899********************************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.0E-144394IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
IADVWSCGVT LYVNIKGYCD HERAGKWENK SGDPLCGLQD AEKDVASEHR DDAVSSMVYE  60
ARATLRDPVY GCAGVVCRLQ QQLCDLQSQL AIAQAQIFNL HCQQTNLLAF LRASNSSFGI  120
GGET
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1047711e-64BT104771.1 Picea glauca clone GQ02814_K04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734188.16e-25LOB domain-containing protein 1-like
SwissprotQ9LQR05e-18LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7BKX06e-23A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like
STRINGXP_004307415.11e-22(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-11LOB domain-containing protein 1