PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033223-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 485aa    MW: 53946.9 Da    PI: 5.2456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033223-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.6e-103483255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +  +  eI+dp++   +  ++lg+++taeeAa a++ a++++ g
  PSME_00033223-RA 34 RYRGVRRRP-WVGFDGEICDPKT---KELWWLGTYDTAEEAACAYDFAARAMTG 83
                      69*******.99999*****854...5*********************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-213497IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-153491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-223490IPR001471AP2/ERF domain
PROSITE profilePS5103217.2013491IPR001471AP2/ERF domain
PfamPF008471.7E-43483IPR001471AP2/ERF domain
CDDcd000181.43E-213490No hitNo description
PRINTSPR003676.9E-63546IPR001471AP2/ERF domain
PRINTSPR003676.9E-65773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESLRPNK LSEKQFKRGK EAGRYRGVRR RPWVGFDGEI CDPKTKELWW  60
LGTYDTAEEA ACAYDFAARA MTGIKARTNF IYLTSEHCML STPTPPASLT GSMFSTNIKD  120
PFSHKPQKLQ DSWLDCLWRD SSTTRPGPCD EAKQQQQKQQ FSVNVGYNML GNTVSSWRPS  180
NNEIENNNNQ LLAGVGSSSV VPVSLARDHH SINASTWQNL PLADPLLLSL SKNAIDHTLR  240
STIPSPVSSS TTCSSVTKIS DHKSAFNNNI TITPENAIPL SNPVESVYFL PCLEEPASDV  300
CSTVSPYSYT LSSNVEHQFQ NLADTNGHSD SGLLDQIISG YLPMSVSATS HASSVCIPKY  360
FSNNNTLNCA VCVPQENYST ITPTCNGFNT TDHIMADLER FIETNYIGLY FNPEAQQPPP  420
PPPQDQLQQQ QQLEANNFNS THFSGPYPYA DYLFSMPPIS NALEEILHLT PELFDSQQYG  480
SGYYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-142990971Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.16e-17ERF family protein