PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00033282-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 398aa MW: 44107.8 Da PI: 8.96

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00033282-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.7e-14	220	266	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++++L PSME_00033282-RA 220 KSHSEAERRRRERINNHLATLRSLLPNT-----TKTDKASLLAEVIDHVREL 266 79***********************9.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.288	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-15	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.9E-12	220	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.37E-5	220	270	No hit	No description
SuperFamily	SSF47459	2.22E-15	221	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-15	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	3.34E-5	303	377	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.1E-7	304	375	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
EKWCRKRYWR LRKEGAVEKE GKERGMERCF AAGTDESGVR VAVVWAGYSF QRRVIPWGRE 60 GLNILRETRK EMQQDDQAGR SMNTRRADQD SKMMFPTWPT IAVPSHNVGQ GHMEPFQTQV 120 IPGRDQILAA MASEGGSSSS NSFSGFQDLM NGGAPLQFSY DYRGGHMLQV PAGLASFSSV 180 DHKSVHDRLL PPVLMCRSAL EMNKMSAQEF VEAKALAASK SHSEAERRRR ERINNHLATL 240 RSLLPNTTKT DKASLLAEVI DHVRELKRMV DDIGQASPVP SESDEVSLEY PDPSEEGRQV 300 IRASLCCEDR PDLLSDLIKT LRSLRLRAVK AEIATLGSRV KNVLVVTSGG SQDPSDVSET 360 PSASRIQEAL KAVMERQNSG DLSPATSSGG NKRQRQVG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

EKWCRKRYWR LRKEGAVEKE GKERGMERCF AAGTDESGVR VAVVWAGYSF QRRVIPWGRE  60
GLNILRETRK EMQQDDQAGR SMNTRRADQD SKMMFPTWPT IAVPSHNVGQ GHMEPFQTQV  120
IPGRDQILAA MASEGGSSSS NSFSGFQDLM NGGAPLQFSY DYRGGHMLQV PAGLASFSSV  180
DHKSVHDRLL PPVLMCRSAL EMNKMSAQEF VEAKALAASK SHSEAERRRR ERINNHLATL  240
RSLLPNTTKT DKASLLAEVI DHVRELKRMV DDIGQASPVP SESDEVSLEY PDPSEEGRQV  300
IRASLCCEDR PDLLSDLIKT LRSLRLRAVK AEIATLGSRV KNVLVVTSGG SQDPSDVSET  360
PSASRIQEAL KAVMERQNSG DLSPATSSGG NKRQRQVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	230	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT101202	0.0	BT101202.1 Picea glauca clone GQ0072_L17 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189500.1	5e-68	transcription factor bHLH30-like
Swissprot	Q9S7Y1	1e-63	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A3B6JKP9	1e-66	A0A3B6JKP9_WHEAT; Uncharacterized protein
TrEMBL	A0A453IGI1	1e-66	A0A453IGI1_AEGTS; Uncharacterized protein
STRING	EMT18288	2e-66	(Aegilops tauschii)
STRING	cassava4.1_010668m	5e-67	(Manihot esculenta)
STRING	Traes_4AS_DD16F89E7.1	6e-67	(Triticum aestivum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-58	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]