PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033300-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 285aa    MW: 30834.2 Da    PI: 7.0773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033300-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.5e-07204229530
                       HHHHHHHHHHHHHHHHHHHHCTSCCC CS
               HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                       h+++Er RR+ri +++  L+el+P++
  PSME_00033300-RA 204 HSIAERLRRERIAERMKALQELVPNS 229
                       99**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-7198232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.017199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-6203232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.52E-6203239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MQYSNYDESQ FLASRLRQHP LSGNSSMNQT PNQVSQGINE TNMSSDRSMV LQLSTGNATA  60
SQLLASMGNS PRGTAVMTRS TSTGGSCNGS DRGMLPLPLS LGQAGKSGEM NETRSQDEIE  120
ASFNSANNAR DSNLGGMFPP FAGSPRGVRP PGQNFHPQSR QVPMQGYGGM PQPQHQNPPP  180
TGVGAAPPVR PRVRARHGQA TDPHSIAERL RRERIAERMK ALQELVPNSN KMPSIDEAED  240
PLPNIDPMPP VPNIDEGDEG NPLAVAKYIQ DMSKFYREKE VNLSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150430.0BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.