PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033305-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 217aa    MW: 24495.6 Da    PI: 4.7513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033305-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000411191451441
                       HHHHHHHHHHHCTSCCC...TTS-STCH CS
               HLH  14 driNsafeeLrellPkaskapskKlsKa 41 
                       d +N++++ L+++lP++  a+++K +K+
  PSME_00033305-RA 119 DAVNKRLDLLQSILPER-TAYKGKDNKS 145
                       789*************6.49******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYLDQPLDEC SDGYYNSRSL IGFEDYVGKN NGDVHYQHAN FEEEDSSIAS DASSGPHQLL  60
DVAQFTEFQN GGDLKLTSLD VPEIRQSKRR RLESDNIVQK DLYLLEDTTS SPVCISKVDA  120
VNKRLDLLQS ILPERTAYKG KDNKSKGINM VLLAGDFDGD CGVLRKRGLC LVPISTMRSG  180
GLVWREWMCA MITFLEGEKH NRQTALLTDE FLCFVHF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18791KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AD952e-73D5AD95_PICSI; Uncharacterized protein