PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033425-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 188aa    MW: 21656.2 Da    PI: 7.5546
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033425-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.7e-101161492255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps++++  LA+++gL+++q+ +WF N+R ++
  PSME_00033425-RA 116 WPYPSESQKIALAESTGLDQKQINNWFINQRKRH 149
                       59*****************************885 PP
2ELK41.72.4e-146990122
               ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                      +LK+qLlrKYsgyL+sLkqEF+
  PSME_00033425-RA 69 DLKDQLLRKYSGYLSSLKQEFL 90
                      6********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011882.1E-76990IPR005539ELK domain
PfamPF037893.4E-116990IPR005539ELK domain
PROSITE profilePS5121311.4186989IPR005539ELK domain
PROSITE profilePS5007112.69889152IPR001356Homeobox domain
SuperFamilySSF466897.7E-2091165IPR009057Homeodomain-like
SMARTSM003891.0E-1391156IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-2894154IPR009057Homeodomain-like
CDDcd000863.59E-13101153No hitNo description
PfamPF059204.2E-17109148IPR008422Homeobox KN domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSGFNAFVRC YVFGQSSPKP CFIALTNKQK NGTDQGDERG DGAVSSEEED GSGGEVEFHE  60
VDPHAEDRDL KDQLLRKYSG YLSSLKQEFL KKKKKGKLPK EARQKLLDWW NRNYKWPYPS  120
ESQKIALAES TGLDQKQINN WFINQRKRHW KPSEEMQFVV MDSPNPHNSA FFLEGHLRTD  180
GSAFSMDC
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4832770.0AF483277.1 Picea abies KNOTTED1-like homeodomain protein 2 (HBK2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444605.19e-65PREDICTED: homeobox protein SBH1-like
SwissprotO041351e-61KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A0S2CBQ12e-97A0A0S2CBQ1_PINPS; Homeobox transcription factor KN3
TrEMBLA0A3G6J9U53e-97A0A3G6J9U5_PINTA; Homeobox protein knotted-1-like 1
TrEMBLD5A8H51e-99D5A8H5_PICSI; Uncharacterized protein
TrEMBLQ5SC632e-97Q5SC63_PINTA; Homeobox transcription factor KN3
TrEMBLQ8GZN05e-98Q8GZN0_PICAB; KNOTTED1-like homeodomain protein 2 (Fragment)
STRINGGorai.009G181500.13e-64(Gossypium raimondii)
STRINGevm.model.supercontig_152.563e-64(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-53KNOTTED-like from Arabidopsis thaliana