PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033470-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 461aa    MW: 49993.2 Da    PI: 6.514
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033470-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33283340259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers edp++v++tYeg+H+h+
  PSME_00033470-RA 283 EDGYRWRKYGQKAVKNSPYPRSYYRCTNTKCSVKKRVERSFEDPSIVITTYEGQHTHQ 340
                       8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-35267342IPR003657WRKY domain
SuperFamilySSF1182904.05E-29274342IPR003657WRKY domain
PROSITE profilePS5081130.997277342IPR003657WRKY domain
SMARTSM007741.1E-39282341IPR003657WRKY domain
PfamPF031063.0E-26283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009624Biological Processresponse to nematode
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAGEQSLPKS QVQERQADAM WKHLAGEISS GPFVEHPTEH GKQTRDSGSW NINPSPYSDN  60
RDRDLLFQSM SAAANMNMMN TVLLPESSSH GGFFGSSSEL WSGMEGSDRQ TGLPMISAGL  120
AELMEIDAGF DSPYMSFTQC LQAGLQMDPT DYSRSLGQTV TGSQGATPFD FSSPLTAEER  180
AGAGAGSGHI GDTPNVPTTP VSSISSSSTE AIEDQEPSPL ATVASTSGAK GGATVPQAPG  240
DQESLDKPSP QSKKQSKPRK KGQKRNREPR FAFMTKSDVD HLEDGYRWRK YGQKAVKNSP  300
YPRSYYRCTN TKCSVKKRVE RSFEDPSIVI TTYEGQHTHQ SPALLRSSGG GEASHIAERS  360
TTNSLPPFSQ SPLNFPLQMM APRTTGAAAS FDHHIQQQQQ QQQDQETDLQ TSQRHMISAV  420
PPPHPALLQQ RSQPQTSAAV PNSIDHGLLE DIVPSGMRKL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-242753431078Probable WRKY transcription factor 4
2lex_A3e-242753431078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697731e-46EU269773.1 Pinus monticola WRKY transcription factor PmWRKY125 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QXU11e-108A0A0D6QXU1_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.16e-44WRKY DNA-binding protein 71