PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033503-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 260aa    MW: 28781 Da    PI: 4.9086
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033503-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1953101355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+ +l+g
  PSME_00033503-RA  53 YRGVRRRS-WGKWVSEIREPKK---KSRIWLGSFDTPEKAARAYDVAAFYLKG 101
                       9****887.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-1351101IPR001471AP2/ERF domain
SMARTSM003801.2E-3752116IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2052111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-3052111IPR001471AP2/ERF domain
PROSITE profilePS5103223.85452110IPR001471AP2/ERF domain
PRINTSPR003671.6E-105364IPR001471AP2/ERF domain
CDDcd000187.34E-3253112No hitNo description
PRINTSPR003671.6E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTSFLSDCMQ YSSSTDSEAN SKSTSKAKGG NKRIRTQDET DPQKALNLQY PAYRGVRRRS  60
WGKWVSEIRE PKKKSRIWLG SFDTPEKAAR AYDVAAFYLK GKEHASLNFP ELMQDHQLPQ  120
LISLSPREIQ AAAAEAAVAF NSASESAGSS GRSSDVLNNQ EKRSNEHAAL LSSDELSAIL  180
SSSDLQKAAS AQLSGKSSDT YCITSPVWTS VMVDDLFESF NLYTYLAEAL MLPPPPTPYS  240
IDEVEVEEQK LEQGFLWSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1744111673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ABJ61e-58D5ABJ6_PICSI; Uncharacterized protein
STRINGXP_004136219.11e-33(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.14e-33ERF family protein