PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033537-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 222aa    MW: 25253.1 Da    PI: 4.6152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033537-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-1067109855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR+++N+ + +Lr+++P+ +      K++K +i+  A+ Y+ +Lq
  PSME_00033537-RA  67 SERKRRKKLNDTLYTLRSVVPNiS------KMDKESIVGDAISYVLDLQ 109
                       6*********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.56459108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1564126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-1265114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-866109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-966113No hitNo description
Gene3DG3DSA:4.10.280.107.3E-1467123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDFEILKSDY DDQNNKPWMD NMAEIAAQFD WNDSDPENTG LPKPATCKTN DLDLDLDLHS  60
ASKNLHSERK RRKKLNDTLY TLRSVVPNIS KMDKESIVGD AISYVLDLQK KIQEIEGEIE  120
GLCRSNKGDG HTQNTPEMSR PLIKPNYALE KRSSESCDEK KSVEKLKPGK VLEVRSLGDV  180
GADKLEDMIR KTMTRASENF KDENGGFFYN STGDQLEEED DK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-1464118963Transcription factor MYC2
5gnj_B7e-1464118963Transcription factor MYC2
5gnj_E7e-1464118963Transcription factor MYC2
5gnj_F7e-1464118963Transcription factor MYC2
5gnj_G7e-1464118963Transcription factor MYC2
5gnj_I7e-1464118963Transcription factor MYC2
5gnj_M7e-1464118963Transcription factor MYC2
5gnj_N7e-1464118963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16774ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN66e-73B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.31e-15bHLH family protein