PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00033699-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 265aa MW: 29239.8 Da PI: 8.4839

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00033699-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	6.7e-14	19	67	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G++ W+ + + g++R++k+c++rw++yl PSME_00033699-RA 19 RGAWTAKEDMILSEYIRIHGNDgGWANLPTKAGLKRSGKSCRLRWLNYL 67 89*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-18	10	77	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.018	14	71	IPR017930	Myb domain
SMART	SM00717	6.7E-10	18	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.49E-16	19	115	IPR009057	Homeodomain-like
Pfam	PF00249	8.2E-13	19	67	IPR001005	SANT/Myb domain
CDD	cd00167	1.70E-7	21	67	No hit	No description
PROSITE profile	PS50090	4.716	68	115	IPR017877	Myb-like domain
SMART	SM00717	8.3	72	117	IPR001005	SANT/Myb domain
CDD	cd00167	0.00385	77	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-7	98	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
RRISIMDSSP CCSKEGLNRG AWTAKEDMIL SEYIRIHGND GGWANLPTKA GLKRSGKSCR 60 LRWLNYLPPD IKRGNISADE EELRSLLLGC IAFLAIGRLP ERTDNEIKNY WNTHLSKKLL 120 LMNQSSTTAT NLKRRSKSPF IVQNHVLNTG PVKKTTVVTQ SQMVRSNSFN VYGCSNRDSH 180 EGFKSCNVEE TMNSSKPFSD LTAATDLITN NDSQPIESKE SRNSTASMSS LVESGRSPDS 240 DSCGGDATSL AESLVDLNEL STSRL

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9S9K9	3e-45	MYB3_ARATH; Transcription factor MYB3
TrEMBL	A0A167V911	1e-84	A0A167V911_PICAB; Transcription factor MYB31
STRING	XP_004287618.1	5e-52	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-47	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]