PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033718-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 696aa    MW: 76828.7 Da    PI: 7.1572
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033718-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.71.5e-211873156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      r++ +++t++q++eLe+lF+k+++p++++r eL++ lgL+ rqVk+WFqNrR+++k
  PSME_00033718-RA 18 RKRYHRHTAHQIQELEALFKKQPHPDEKQRLELSRDLGLEPRQVKFWFQNRRTQMK 73
                      789999***********************************************998 PP
2START165.73.2e-522104332206
                       HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                       la  a +e+  +a  +ep+W +      +++  + ++++f+++        + e+ r+sg+v+ + + l  +++d++ +W e+++    ka+t
  PSME_00033718-RA 210 LAINAVEEVTNLAHTGEPLWIRNIndnkDILSLECYTKIFPRAMEskaynVRKEVTRDSGLVIVNGHSLADIFMDTN-KWIEMFPtivaKAKT 301
                       67788999999*************988888888889999988665888888899*************9999999999.*************** PP

                       EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
             START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                       +e + +g      g lqlm ael +ls+lv  R+ +f+Ry+ q+++g w+ivdvSvd+  ++p ++s+ R+++lpSg++i++++ng+skvtw+
  PSME_00033718-RA 302 VEILIPGtpgnrhGSLQLMCAELHVLSHLVLpREIYFLRYCHQSPEGIWAIVDVSVDNMIQNP-QASLSRCRKLPSGLVIQDMANGYSKVTWI 393
                       ****************************9966*******************************.9**************************** PP

                       E-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 168 ehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                       ehv++++r   h ++r+lv+sg+a+ga++w+atlqr+ce+
  PSME_00033718-RA 394 EHVEPEDRAGvHRMYRQLVNSGMAFGAQRWLATLQRNCER 433
                       *******9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-22475IPR009057Homeodomain-like
SuperFamilySSF466891.59E-20875IPR009057Homeodomain-like
PROSITE profilePS5007118.1721575IPR001356Homeobox domain
SMARTSM003892.0E-191679IPR001356Homeobox domain
PfamPF000464.1E-191873IPR001356Homeobox domain
CDDcd000868.26E-191875No hitNo description
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PROSITE profilePS5084847.612200436IPR002913START domain
SuperFamilySSF559613.06E-34203434No hitNo description
CDDcd088754.96E-104204432No hitNo description
SMARTSM002342.0E-42209433IPR002913START domain
PfamPF018522.5E-43210433IPR002913START domain
Gene3DG3DSA:3.30.530.209.7E-6296429IPR023393START-like domain
SuperFamilySSF559613.93E-15462664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MEGSGSDQDA ADQQNSARKR YHRHTAHQIQ ELEALFKKQP HPDEKQRLEL SRDLGLEPRQ  60
VKFWFQNRRT QMKAQGERAD NNSLRVDNER IRSENLAMRD ALKYVLCSNC GGPPTGETSF  120
EEQQRLRLEN ARLKEELDRL SGIAAKYIGR PIQTPASLHQ ISMPSLDLGD VGYGIENVGP  180
STDVITSGQS LADFSMSTGS ALEKNLIKEL AINAVEEVTN LAHTGEPLWI RNINDNKDIL  240
SLECYTKIFP RAMESKAYNV RKEVTRDSGL VIVNGHSLAD IFMDTNKWIE MFPTIVAKAK  300
TVEILIPGTP GNRHGSLQLM CAELHVLSHL VLPREIYFLR YCHQSPEGIW AIVDVSVDNM  360
IQNPQASLSR CRKLPSGLVI QDMANGYSKV TWIEHVEPED RAGVHRMYRQ LVNSGMAFGA  420
QRWLATLQRN CERLSNLMPA NIAARELGGS SPNERRFFMK LAHCMTSNFC ANISASTVHR  480
WSAASGSTDD GVLFSTRKYT GSTGNALCAV TSVWLPVSPQ RVFDFFRDTR NRSLWDAVSG  540
GNSSKEVLHI ALGSHPANCI SLFRAPTSVN NNFFFLQESC TDSSGSLMVY GPVDINALEA  600
ALNNRGDPST IHVLPSGIVV LPDGSDNRRL QASSSNSSNI GSPGNTGAGG SLLTLVFEIN  660
VGNSPSANLQ DHVTTVNQFV CNAVQQIRAA LHCPDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268321.10.0PREDICTED: homeobox-leucine zipper protein HDG11-like isoform X1
TrEMBLA0A0D6QXF50.0A0A0D6QXF5_ARACU; Uncharacterized protein
STRINGXP_010268321.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2