PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033789-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 443aa    MW: 50568.4 Da    PI: 8.9561
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033789-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28164221259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG+K  k+s++pr+YYrC+ ++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00033789-RA 164 QDGYKWRKYGRKFLKNSPNPRNYYRCSDRNCDVKKTVERDAHDNGIVITTYLGNHNHE 221
                       8********************************************************8 PP
2WRKY91.37.5e-29350408159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYG+K  k+s++prsYYrC++++C vkk ver+a+d+ +v++tY g+Hnhe
  PSME_00033789-RA 350 MQDGYKWRKYGRKFLKKSPNPRSYYRCSYSNCDVKKTVERDAHDKGIVITTYLGTHNHE 408
                       58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30152223IPR003657WRKY domain
SuperFamilySSF1182902.62E-26155223IPR003657WRKY domain
PROSITE profilePS5081129.551158223IPR003657WRKY domain
SMARTSM007748.8E-31163222IPR003657WRKY domain
PfamPF031061.5E-22164221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-30338410IPR003657WRKY domain
SuperFamilySSF1182901.31E-26342410IPR003657WRKY domain
PROSITE profilePS5081128.851345410IPR003657WRKY domain
SMARTSM007742.9E-30350409IPR003657WRKY domain
PfamPF031066.1E-23351408IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
KPIGLHGGIR RVQVFQISSK DFVSFWETVE VFAMANFDPI IRHFQDAIKG FSKGQTQPLQ  60
EANCSQNRKG AEAFEISDFL VFKEDADDQS CNFKTGTSGP SIQRDYAGSF PTNPPCIHLN  120
HNSNVIQAHE SRETINPQEG SRKRKAERGL KYAFLTRSET DILQDGYKWR KYGRKFLKNS  180
PNPRNYYRCS DRNCDVKKTV ERDAHDNGIV ITTYLGNHNH ESPTRIGHFQ DAVKGFSKEE  240
TQPLQEANCS QHIKGAEAFE ISDFLNVLEE DAGDQSFNFK TGTSGPSVQR DYARAFPSSA  300
PCIQGIHLDH NSTVIQTQKP FETINLKERS RKKKAELKYA FVTRSETDIM QDGYKWRKYG  360
RKFLKKSPNP RSYYRCSYSN CDVKKTVERD AHDKGIVITT YLGTHNHESP TVIYYIERPE  420
MHQAASASTP NYELGNGVFL RSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21156410774WRKY transcription factor 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-38WRKY DNA-binding protein 33