PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033843-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 373aa    MW: 41955.7 Da    PI: 4.4313
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033843-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.6e-20117170356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++++q++ Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  PSME_00033843-RA 117 KKRRLSADQVHFLEKSFEVDNKLEPERKTQLARDLGLQPRQVAVWFQNRRARWK 170
                       55689************************************************9 PP
2HD-ZIP_I/II134.24.5e-43117206291
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       kkrrls++qv++LE+sFe ++kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE++y+ Lk++yd+l+e+ ++L ke+e+Lr+e+
  PSME_00033843-RA 117 KKRRLSADQVHFLEKSFEVDNKLEPERKTQLARDLGLQPRQVAVWFQNRRARWKTKQLEREYDILKSSYDTLREDYDNLLKEKEKLRSEV 206
                       9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-20107174IPR009057Homeodomain-like
PROSITE profilePS5007117.313112172IPR001356Homeobox domain
SMARTSM003899.8E-20114176IPR001356Homeobox domain
CDDcd000861.73E-18115173No hitNo description
PfamPF000465.2E-17117170IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-21119179IPR009057Homeodomain-like
PRINTSPR000311.2E-5143152IPR000047Helix-turn-helix motif
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5152168IPR000047Helix-turn-helix motif
PfamPF021832.0E-16172213IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MLWLTHWDPV CGLCGAQASF VTSTFSSGAI SGRTLRSEGL LSVLNKMASN GIMFNASNRN  60
LLVMMNETPS FEAGSTPLTS LDGVMKNVSK RPFYTTLDAE EAGDEDLLDD CVHQPGKKRR  120
LSADQVHFLE KSFEVDNKLE PERKTQLARD LGLQPRQVAV WFQNRRARWK TKQLEREYDI  180
LKSSYDTLRE DYDNLLKEKE KLRSEVICLT DKLHAKEKGL EIQTNDLETT SKKAFIQSNS  240
QLESLEKSGI VSKGMAGPFD QQLLSYSTED PLSSGTDGSA VVDEESPSHI DSGHSSVVGY  300
DSSTHISPFE ADQSDFSHVD EEEEEDGMSE KLLPPQDCHV LKMECELFPE APTTSCTYVF  360
AMDDQENLWW DWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164172RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1031600.0BT103160.1 Picea glauca clone GQ0207_I11 mRNA sequence.
GenBankEF6763130.0EF676313.1 Picea sitchensis clone WS02730_N05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKP40.0B8LKP4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-55homeobox 1