PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00033961-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 202aa    MW: 22411.9 Da    PI: 4.3512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00033961-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-172473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kGVr +k +g+Wv+eIr p+    +  r++lg+++t+e+Aa+a++ a  +l+g
  PSME_00033961-RA 24 QFKGVRMRK-WGKWVSEIRMPN----SgGRIWLGSYDTPEKAARAYDFAVYYLRG 73
                      69*****99.**********94....248******************99999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-292383IPR001471AP2/ERF domain
PROSITE profilePS5103221.5752481IPR001471AP2/ERF domain
CDDcd000183.12E-292483No hitNo description
SMARTSM003803.8E-332487IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-212483IPR016177DNA-binding domain
PfamPF008471.9E-102573IPR001471AP2/ERF domain
PRINTSPR003671.0E-82536IPR001471AP2/ERF domain
PRINTSPR003671.0E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MATLTPFNPN GHSRPEIHSV NSRQFKGVRM RKWGKWVSEI RMPNSGGRIW LGSYDTPEKA  60
ARAYDFAVYY LRGSKAKLNF PDSPPEIPCN SDLSPQQIQA EAAKFSAQEF RLASEDGAAC  120
SSFDLETKCD IEEFRLASED GAACSSSNLE TKCDIDGQQI TAEQSPAFCD LLSLEVMENC  180
NSPSLEDFPA LDVSLEEFGY PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-172381160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPP66e-61B8LPP6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-36ERF family protein