PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034008-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 956aa    MW: 102947 Da    PI: 7.9026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034008-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.31.4e-32475531259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers  +++v+ei+Y+g+Hnh+
  PSME_00034008-RA 475 EDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSP-QGQVTEIVYKGTHNHP 531
                       7****************************************.9**************8 PP
2WRKY106.41.4e-33696754159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  PSME_00034008-RA 696 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 754
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-28472533IPR003657WRKY domain
SuperFamilySSF1182902.22E-25473533IPR003657WRKY domain
SMARTSM007741.4E-35474532IPR003657WRKY domain
PfamPF031061.3E-25475531IPR003657WRKY domain
PROSITE profilePS5081122.963475533IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-38681756IPR003657WRKY domain
SuperFamilySSF1182901.7E-29688756IPR003657WRKY domain
PROSITE profilePS5081139.054691756IPR003657WRKY domain
SMARTSM007744.1E-40696755IPR003657WRKY domain
PfamPF031062.3E-26697754IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MAAREENNKM GFLDFSPLAS PTTIFASMMG EEFGSRSFSQ LLTGPQIETP QGQEQNLKPL  60
SPAGFNGSSS SSRSGKENDP FSISGGFPAG SVLASGFGQV QKPPPRTGGG SFAERLAARG  120
GFNAPRLNTA RFKCLPSVSS PVGVRSPYLT IPPGLSPTTL LDSPVLLSNS QAEQSPTTGS  180
FPLPPFLNES SLSPPLNSGS DGLKEKSYED GTSSSFIFKP HVKSGPSSCL SPLGGLTRPS  240
GSPPSTSRGQ NALPMEDPAI SARGATRKPY KLTVILYPVK ATFSCSQQQA GGGFQVQAES  300
QTWAPFDTQM HNRSHSPGQA QMFAQFQNQA HVQAYTQAQN QAEAQALLQA ENKVHNQAAA  360
QVKTQAQGQG QAHVPAQGQS QLWEQAVPHS TETKELVAYS LPESAVSSNV VEDAQCVPPL  420
QVVPPLHVVP RDFPTEQTDP SEDQGQMQGS DTQLRLPEGE QKGSAPHSII GRPSEDGYNW  480
RKYGQKQVKG SEFPRSYYKC THPNCQVKKK VERSPQGQVT EIVYKGTHNH PRPQPSRRSA  540
VGSAHMIHEG AESTEGSSAI IKVEGGSTWR NTELGLVKDK DATNSSKAWK NELLERSSSA  600
SVVTDLSDPS STAQVQSSSH IESLGTPEPS STLASDDDME DGGTNDSKSM GDDGDENESD  660
SKRRKKESST VDIVAASRAI REPRVVVQTT SEIDILDDGY RWRKYGQKVV KGNPNPRSYY  720
KCTNAGCPVR KHVERASHDP KAVITTYEGK HNHDVPAARN SSHDNAAKGN GAASLAMQTN  780
GPAPMNTIPR SVPQVQDIVS RPVPQVQGIV SRFDRHLDPR NEYAKRAFFE KAVDDNLRMQ  840
DKNAANLDLK VGAGMGFGMF GLGNGHSDKR QLAEGHPTFP MQIHGTTNHG LSGIELNNGK  900
PIAPVQSYFG QAKENGMRFL RPKEEQNNDS GFGNMFNAPS NPSLYQQIMG RLSMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-38475757878Probable WRKY transcription factor 4
2lex_A4e-38475757878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1029780.0BT102978.1 Picea glauca clone GQ0204_F05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621822.21e-152probable WRKY transcription factor 20
TrEMBLA0A0C9RMD20.0A0A0C9RMD2_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11092_3323 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.12e-86WRKY family protein