PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00034173-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 115aa MW: 12965.3 Da PI: 5.6877

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00034173-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.5	9.2e-19	53	98	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+C+++C+++pyf +p+kfanvhk+FGasn++ +l PSME_00034173-RA 53 PCAACKLLRRRCVQECPFSPYFSPLEPEKFANVHKVFGASNICAML 98 7******************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.415	52	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-18	53	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MVAKRCEQPD TLDVTAQIDW IILSRKIFEE TDVCEMAHRP MLGSPDVLNT ITPCAACKLL 60 RRRCVQECPF SPYFSPLEPE KFANVHKVFG ASNICAMLLV TLFQTFLLIG ICISD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-18	44	98	2	56	LOB family transfactor Ramosa2.1
5ly0_B	3e-18	44	98	2	56	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006376019.2	4e-34	LOB domain-containing protein 15
Refseq	XP_016684598.1	3e-34	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-31	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1U8J7K8	6e-33	A0A1U8J7K8_GOSHI; LOB domain-containing protein 15-like
TrEMBL	A0A2K1Y2W3	9e-33	A0A2K1Y2W3_POPTR; Uncharacterized protein
STRING	cassava4.1_029925m	4e-33	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-34	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]