PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034200-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 436aa    MW: 48596.9 Da    PI: 6.5018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034200-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.57.7e-143482254
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ rgr++AeI d       +  r +lg+++taeeAa a++ a++++ 
  PSME_00034200-RA 34 RYRGVRRHP-RGRFAAEISDtK-----TkERRWLGSYDTAEEAACAYDFAARAMS 82
                      69*******.8*********33.....34999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.7E-273497IPR001471AP2/ERF domain
PfamPF008472.7E-93483IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-173491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-233490IPR001471AP2/ERF domain
CDDcd000189.17E-243490No hitNo description
PROSITE profilePS5103218.8743491IPR001471AP2/ERF domain
PRINTSPR003677.3E-63546IPR001471AP2/ERF domain
PRINTSPR003677.3E-65773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MKSQQQQSEL QKNESMIPNK LSQKQFKRGK EAGRYRGVRR HPRGRFAAEI SDTKTKERRW  60
LGSYDTAEEA ACAYDFAARA MSGIKAQTNF IYLNLEHCML STPTPPASLT GSTFPTNIKD  120
PFSHKPQKMQ DSWLDCLWLD SSTTRPSPCD EAKQQQQKQQ FSINGGYNML GNTVSSWRPS  180
NNEIENNNNQ LIAGASSSSG VPVSLPRDHH SINASAWQNL PLADPLLLSL SKNTIDHTHR  240
STIQSPVSSS TACSSVTKIS AHNRAFNNNI TITPENEIPL SKSVESVYFL PCLEEPACEV  300
CSQVSPYSYT LSSNMEHQFQ NLADSNGHSN SGLLDQIISG YLPMSVSATS PASSVCIPKY  360
FSNNNTLNCV VYVPQENYST ITPTCTGFNT SDHIMEDLER FIETNYIGLY FNPEAQQQPQ  420
DQHQQLPPPQ DQPQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-162990971Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-08DORNROSCHEN-like