PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034201-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 433aa    MW: 48271.4 Da    PI: 6.6674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034201-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-104694254
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                      +y+G+r+++ rgr++ eIrd          r +lg++ taeeAa a++ a++++ 
  PSME_00034201-RA 46 RYRGIRRHP-RGRFAGEIRDaK-----AkERRWLGTYYTAEEAACAYDFAARAMS 94
                      69*******.8*********44.....34999****************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-2146102IPR001471AP2/ERF domain
SMARTSM003807.8E-2446109IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1546103IPR016177DNA-binding domain
PROSITE profilePS5103218.43946103IPR001471AP2/ERF domain
CDDcd000181.63E-2246102No hitNo description
PRINTSPR003671.7E-54758IPR001471AP2/ERF domain
PRINTSPR003671.7E-56985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MCIFTLFEVL NTMKSQQQQS ELQKNESLSP NKLSEKQFKR GKEAGRYRGI RRHPRGRFAG  60
EIRDAKAKER RWLGTYYTAE EAACAYDFAA RAMSGIKART NFIYLNSEHC MLSTPTPPAS  120
LTGSTFPTNI KDQFSHKPQK LQDRWLDCLW RDSSTTRPSP CDEAKQQQQK QQFSVNGGYN  180
MLGNTASSWR PSNNEIENNN NQLLAGAGSS SVVPVSLPRD HHSINASTSQ NLPLADPLLL  240
SLSKNTIDDT HRSTIPSPSL LVSPVSPYTY TLSSNVEHQF QNLADSNGHS DSGLLDEIIS  300
GYLPMSVSAT SPASSVCIPK YFSNNNTLNC AVYVPQENYS TITPTITPSC TGFNTKAQQQ  360
PQDQQQQPPP PQDQPQQQQQ LEANNFNSTH FSAPYPYTGY LFSMPPISDA LEEILHLTAE  420
LSDSQQYDNG YYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1541102971Ethylene-responsive transcription factor ERF096