PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034388-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 220aa    MW: 24969.1 Da    PI: 9.359
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034388-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.91.6e-33361282103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+y++++d+++++++sw +++n+fvv+++eef+ +vLp+yF hsnf+ FvRQLn+YgF+k+ + +          eF ++ Fkkg+k+ll
  PSME_00034388-RA  36 FLVKTYRLVDDSSTDHIVSWGDRNNTFVVWNPEEFSASVLPSYFNHSNFSTFVRQLNTYGFRKIVRGR---------CEFGNHLFKKGQKHLL 119
                       9***************************************************************9988.........67************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  PSME_00034388-RA 120 SHIQRRKSS 128
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.9E-5032125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.2E-3534125IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3234125IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-173659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.3E-2936125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-177486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-178799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MYTWAASDHE ALNAGRFLMG GTGSARDAAR LVAAPFLVKT YRLVDDSSTD HIVSWGDRNN  60
TFVVWNPEEF SASVLPSYFN HSNFSTFVRQ LNTYGFRKIV RGRCEFGNHL FKKGQKHLLS  120
HIQRRKSSAA SHPEYDKSAS IDHSISSTVL QDYDVPAAAP SLLEENEILR RNNSLLLSEI  180
YRLRNICGKD IDSLFTLENT RNRPSLMDMD RSKTLHGRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-213613020125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583395.11e-50heat stress transcription factor B-4b-like
RefseqXP_022018112.12e-50heat stress transcription factor B-4-like
SwissprotQ9C6352e-47HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLH9WUJ37e-71H9WUJ3_PINTA; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr9P15370_0012e-50(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-50heat shock transcription factor B4