PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034412-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 316aa    MW: 35316.4 Da    PI: 9.4837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034412-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12105156154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++++hn+rEr+RR+ ++  +++Lr+l+P  +   +++Kls   ++ ++ +YI +L
  PSME_00034412-RA 105 QKASHNARERQRRKVLKVLYSKLRSLIPDqN---SKRKLSIPNTVGRVLKYIPEL 156
                       689**************************55...8888**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-13102171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-9102161No hitNo description
PROSITE profilePS5088813.357104156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-10106170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-7110162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNAFSVFSGA QTGVYNDLDT RSLLQHTPWE TDYQQPSINI IPPAYWQFGQ PPPPPPSRTD  60
NILLDEYSTS QFGLMHENYY DSLAPGILSS ELLPNYEEHI HSSEQKASHN ARERQRRKVL  120
KVLYSKLRSL IPDQNSKRKL SIPNTVGRVL KYIPELRNEI KKLSKERVEL LGGKLRSELK  180
ELSTERAELI ANTERSIRES SLVTSKSASS TGAEELIYLA RSPPPSAALG SPDHAIVTVS  240
AATLGHSQMI ITIYKCGGGF VLSKLLVLLE KEGLDVLNAS TFFTENKMFA GNSKLDTNLL  300
QKKLLKLLSD KTLKHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.12e-18bHLH family protein