PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034413-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 446aa    MW: 50597.7 Da    PI: 9.1584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034413-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12233284154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       +++ hn+rEr+RR+ ++  +++Lr+llP+ +   p++Kls   ++ ++ +YI +L
  PSME_00034413-RA 233 KKAFHNARERQRRKTLKVLYSQLRSLLPNlN---PKRKLSIPNTVCRVLKYIPEL 284
                       6789*************************55...******************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-14230310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-11230289No hitNo description
PROSITE profilePS5088813.503232284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9233284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-10233309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-7238290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEEGVGAREG TREMQEADGG GCRCMRGEYH ARGGWQLVPT RWTWWRVRKR KKGETEGVDP  60
WPSTHINKVK AILVLWISLL EADLVLIGNK VNHQEEDVEE KNLKAYASNV RHTELGVERP  120
AFIHINYSNP TFIMTMFSSF PSAQTESYND LGVCSFPNSH TATWKTCHQP IIETTPRAYW  180
DFYQQQQQST TDQFGSMHQV YYHGEAPGTF PVNNSQLLSN PREYPGSFNS SKKKAFHNAR  240
ERQRRKTLKV LYSQLRSLLP NLNPKRKLSI PNTVCRVLKY IPELRNEIEK HRRERDELLS  300
TTKRLTCEIS ETSKFASATG AEGLIDFTHP PPPSATLASP DHPSVAVNSS LGNSQLIITI  360
YNCRVGFLFS TLLILLEKGG LDVLNASTFF SQDKICHILH LEMIAGRSAV DTTLLQKKLL  420
ILLSDKPLND VEVSSNFKRK KILCAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14751RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.11e-17bHLH family protein