PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00034712-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 238aa MW: 26687.8 Da PI: 9.9473

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00034712-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	23	81	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le+++ ++++p+a +r++L +++ +++ +q+kvWFqNrR +ek+ PSME_00034712-RA 23 KYVRYTEEQVQALEKFYSECPKPNAFRRQQLIRECpllsNIEPKQIKVWFQNRRCREKQ 81 5678*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.175	18	82	IPR001356	Homeobox domain
SMART	SM00389	5.3E-15	20	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.69E-17	22	86	IPR009057	Homeodomain-like
CDD	cd00086	1.51E-15	23	83	No hit	No description
Pfam	PF00046	9.9E-17	23	81	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-18	25	81	IPR009057	Homeodomain-like
Pfam	PF01852	9.6E-5	181	236	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MSAEDLMAVA RGKDGKYGFD SGKYVRYTEE QVQALEKFYS ECPKPNAFRR QQLIRECPLL 60 SNIEPKQIKV WFQNRRCREK QRKEATRLLA LNEKLKAMNK VLVKQNDNLS KQAFQFVCQN 120 NFLRRQLKLL KEQSTKLDGS KDALVTTEIS SISRLVSGLR KHRVPQAPQC DVNPAWLLAF 180 AEEALSEFLA KATGTGIDWI QIPGMKPGPD SIGIVAVGHG CDGAAARACS LVGMESSR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.
UniProt	Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269\|PubMed:11402194, ECO:0000269\|PubMed:15598805}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.
UniProt	INDUCTION: By auxin. Repressed by miR165. {ECO:0000269\|PubMed:17237362, ECO:0000269\|PubMed:8575317}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ391917	0.0	HQ391917.1 Picea glauca class III homeodomain leucine zipper protein (HB6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791633.1	2e-93	homeobox-leucine zipper protein ATHB-15-like
Refseq	XP_029119049.1	2e-93	homeobox-leucine zipper protein ATHB-15 isoform X2
Swissprot	Q39123	4e-86	ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
Swissprot	Q9ZU11	4e-86	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	E7DX27	1e-157	E7DX27_PICGL; Class III homeodomain leucine zipper protein
STRING	PGSC0003DMT400074932	8e-93	(Solanum tuberosum)
STRING	XP_008791633.1	9e-93	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32880.1	4e-80	homeobox gene 8

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis. Planta, 2014. 239(5): p. 989-1001 [PMID:24488524] Baima S, et al. Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] Kakehi J, et al. Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana. PLoS ONE, 2015. 10(1): p. e0117309 [PMID:25625317] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Liu S, et al. Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis. Front Plant Sci, 2015. 6: p. 388 [PMID:26082787] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918] Yamazaki K, et al. Suppression of DELLA signaling induces procambial cell formation in culture. Plant J., 2018. 94(1): p. 48-59 [PMID:29383774]