PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034803-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 154aa    MW: 17778.7 Da    PI: 8.6779
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034803-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-0649901055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      + RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PSME_00034803-RA 49 KARREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 90
                      78******************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.0933989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-44995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1449108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1449108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-75194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MVSLYNWILK PRVALRLQCV KITEAVDGLK DMKYKTVEGV KEKDDVKYKA RREKISERMK  60
FLQDLVPGCS KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ETVNPRMEFN VEGILAKDLS  120
HVWDNELQSV VQMGFMQNNH TPLTSQGNSD KLEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131512e-91BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024949100.17e-46transcription factor bHLH62 isoform X2
TrEMBLA0A2H5QLN73e-44A0A2H5QLN7_CITUN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-38bHLH family protein