PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00034990-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 254aa    MW: 27143.8 Da    PI: 9.2968
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00034990-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.6e-084773127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ykt+ C+++     C++Gd+C+FaH++
  PSME_00034990-RA 47 YKTRMCNRYGTAEGCRFGDKCHFAHSE 73
                      9************************95 PP
2zf-CCCH32.21.8e-10225249126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y+t+ C  f++ GtC +GdrC+FaHg
  PSME_00034990-RA 225 YRTKMCEKFSQ-GTCTFGDRCHFAHG 249
                       89*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.59E-94477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1084674IPR000571Zinc finger, CCCH-type
SMARTSM003560.0254673IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-134777IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-14129209IPR004088K Homology domain, type 1
SMARTSM003224.4E-9138208IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.8E-15139209IPR004088K Homology domain, type 1
PROSITE profilePS5008413.607139203IPR004088K Homology domain, type 1
PfamPF000133.7E-10141204IPR004088K Homology domain, type 1
CDDcd001051.39E-11143204No hitNo description
Gene3DG3DSA:4.10.1000.103.4E-15223254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8223253IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6224250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.333224251IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7225249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MHYIPGGMNL IPQISNFGSD LGTASRKPRG PPTSILPSDQ VAAVQPYKTR MCNRYGTAEG  60
CRFGDKCHFA HSENEMKKGN TLIPNVEKER TISSYGRPVP GVSDGRPIPG VSDGRPGGRF  120
VQREPTPPGM AAAASFGASA TAKISIDASL AGAIIGKGGV HSKHICRITG AKLAIRDHES  180
DSNLKNIELE GSFDQIKQAS TMVHELILQT STVAAKPSGF VLNNYRTKMC EKFSQGTCTF  240
GDRCHFAHGA SELQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1006971e-176BT100697.1 Picea glauca clone GQ00411_H03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.14e-88PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-70C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9P2811e-143A9P281_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-87(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-52C3H family protein