PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035013-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 521aa    MW: 59356 Da    PI: 9.9839
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035013-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT eEd +l+  ++ +G g W++ ++  g++R++k+c++rw +yl
  PSME_00035013-RA 14 KGTWTSEEDARLIAHIRAHGEGAWRSLPKAAGLRRCGKSCRLRWINYL 61
                      799*******************************************97 PP
2Myb_DNA-binding58.71.3e-1867111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEde++v+++ +lG++ W++Ia  ++ gRt++++k++w+++
  PSME_00035013-RA  67 RGNFSEEEDEQIVKLHSLLGNK-WSLIAGLLP-GRTDNEIKNHWNTH 111
                       89********************.*********.************97 PP
3Myb_DNA-binding22.13.5e-07243268127
                       TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktI 27 
                       rg++++eEde++v+++ +lG++ W+ I
  PSME_00035013-RA 243 RGNFSEEEDEQIVKLHYRLGNK-WSFI 268
                       89********************.*987 PP
4Myb_DNA-binding42.51.5e-13414460147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       + +WT+ Ed +lv  ++ +G g W++ ++  g++R++k+c++rw +y
  PSME_00035013-RA 414 KVAWTPKEDSRLVAHIRSHGEGAWRSLPKAAGLRRCGKSCRLRWINY 460
                       568******************************************99 PP
5Myb_DNA-binding491.5e-15467511147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eEde++v+++ +lG++ W+ Ia  ++ gRt+ ++k++ +++
  PSME_00035013-RA 467 RGNFSEEEDEQIVKLHSRLGNK-WSFIAGLLP-GRTDSEIKNHCNTH 511
                       89********************.*********.**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.985961IPR017930Myb domain
SMARTSM007171.2E-111363IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-2813108IPR009057Homeodomain-like
PfamPF002491.9E-121461IPR001005SANT/Myb domain
CDDcd001671.20E-71661No hitNo description
PROSITE profilePS5129428.73562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2765117IPR009057Homeodomain-like
SMARTSM007174.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.1E-1667111IPR001005SANT/Myb domain
CDDcd001673.02E-1169112No hitNo description
SuperFamilySSF466896.27E-11223268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-9223249IPR009057Homeodomain-like
PROSITE profilePS512949.987238293IPR017930Myb domain
SMARTSM007173.3242291IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-6250268IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-20405464IPR009057Homeodomain-like
PROSITE profilePS5129413.489409461IPR017930Myb domain
SMARTSM007179.5E-10413463IPR001005SANT/Myb domain
SuperFamilySSF466892.26E-25413507IPR009057Homeodomain-like
PfamPF002492.7E-11414460IPR001005SANT/Myb domain
CDDcd001677.83E-7416460No hitNo description
PROSITE profilePS5129423.187462516IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-22465515IPR009057Homeodomain-like
SMARTSM007171.1E-14466514IPR001005SANT/Myb domain
PfamPF002492.3E-13467511IPR001005SANT/Myb domain
CDDcd001673.39E-9469512No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGTWTSE EDARLIAHIR AHGEGAWRSL PKAAGLRRCG KSCRLRWINY  60
LRPDLKRGNF SEEEDEQIVK LHSLLGNKWS LIAGLLPGRT DNEIKNHWNT HIKKKMVSRG  120
FEPQSHIPLS QPHNSNTTCT SLPVPEHEIP AFQSPRTPEP ADIFAYDRSE SSPMQLVASK  180
AEEHPELNLD LRLSLPSHSI PAANRASRIH RAMDSNLNSE RLRRCGKSCR LRWINYPRPH  240
RKRGNFSEEE DEQIVKLHYR LGNKWSFIGV ARTDGQRDKE PLQHPLQEKK WRAGNLNPRG  300
QSHRPLGQPY DSKAAYSSLP GECPPPRMKF QHFFQYGRSE SSSMQLVASK AEEHPELNLD  360
LCMSLTSHSN PAANRASRDH RTVDSNSNYE NGVCCLTGMH MGRTPCCEKA HTNKVAWTPK  420
EDSRLVAHIR SHGEGAWRSL PKAAGLRRCG KSCRLRWINY PRPDLKRGNF SEEEDEQIVK  480
LHSRLGNKWS FIAGLLPGRT DSEIKNHCNT HFKKKNGEQG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-271351526128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.11e-83PREDICTED: myb-related protein 308
SwissprotQ9SZP12e-79MYB4_ARATH; Transcription repressor MYB4
TrEMBLQ27IP21e-120Q27IP2_PINTA; R2R3-MYB transcription factor MYB14
STRINGXP_010028718.15e-83(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-82myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]