PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035054-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 274aa    MW: 31032.1 Da    PI: 8.5824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035054-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.34.3e-0980129155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++ GVr ++ +g +  eI+ p       kr+slg++ t+e A +a++ a+ k++g
  PSME_00035054-RA  80 SRFVGVRKRP-WGEYGDEIQTP-----EgKRISLGTYTTEEVANQAYDDAAHKFKG 129
                       6899******.*****999997.....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-1180136IPR016177DNA-binding domain
CDDcd000182.39E-1780135No hitNo description
PfamPF008473.4E-480129IPR001471AP2/ERF domain
PROSITE profilePS5103216.71381137IPR001471AP2/ERF domain
SMARTSM003804.0E-1481143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1681137IPR001471AP2/ERF domain
PRINTSPR003676.0E-68293IPR001471AP2/ERF domain
PRINTSPR003676.0E-6119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MWTPAKLLQC SGKDSPVEHL DQVRLTLIID LGELDITKMS LKCHVHEPRR STRILKKQKQ  60
IISYGKELIH KGHGRCVSFS RFVGVRKRPW GEYGDEIQTP EGKRISLGTY TTEEVANQAY  120
DDAAHKFKGK GAVTNVSKKS NIDPPLEAPL RSLREHASMF REEPKRRRSS NRKKRDEYQL  180
LPDENATNNL WDITAPGRGP PKLLDGDSSS MFGFNPTSNY INMDNICSSG HLCSPVARFD  240
HDEVGDLTLI SHDLKGISAW EQHIQELCGE KNEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164174KRRRSSNRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.17e-13ERF domain protein 10