PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035099-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family E2F/DP
Protein Properties Length: 415aa    MW: 45549.4 Da    PI: 6.0582
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035099-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP58.31.3e-181712282971
           E2F_TDP  29 evakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       +va+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k ek+eirwkg
  PSME_00035099-RA 171 TVASELVAEfvnpnsthfsqdqqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIRWKG 228
                       69999*999****************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013724.2E-1399228IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-14168229IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.5E-15171228IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-27171233IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.59E-40233336IPR014889Transcription factor DP, C-terminal
SMARTSM011382.5E-56235411IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.94E-40235351No hitNo description
PfamPF087811.4E-39236350IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MTQSQIYLQT ILILLMLFVG ASHFQSSAMF PAGSIQSMSN GLGLVSAPFL ISNVASNKNC  60
LQRDLIHELH EAGIYDYAQS LGIIQNGVFV VQNELWPATG AYSLPISSGA PATYPQFNPC  120
PSVPLVSVDT GSNGSSSRGS DGAIARLASD NIMARLNHLD AEGDEFESPG TVASELVAEF  180
VNPNSTHFSQ DQQQFDEKNI RRRVYDALNV LMAMDIISKE KKEIRWKGLP TTNLSDIEQL  240
KTERKRLTSR IDKKRAYLQE LKEQITGLQN LVLRNERVYG SGNSPSGGVT LPFILVKTRP  300
HATVDIEISE DMQLVHFDFN STPFELHDDA FVLKAMRFCK TPDSSGPVDE KSGNESVFDK  360
KYSVLSTMPK GTSSSHSIRT SDTDSYSLSS IPGKICSSSP DPGIIKARIK SENFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-191722333493PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1111170.0BT111117.1 Picea glauca clone GQ03232_N19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241817.11e-100PREDICTED: transcription factor-like protein DPB
RefseqXP_010241818.11e-100PREDICTED: transcription factor-like protein DPB
TrEMBLD5ABL11e-117D5ABL1_PICSI; Uncharacterized protein
STRINGXP_010241817.11e-100(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.22e-91Transcription factor DP