PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035158-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 215aa    MW: 24513.5 Da    PI: 8.3651
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035158-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29140196258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+WrKYG+K+vk++++pr+Y+rC+ ++C vkk ver+a+d+ +v++tY g+Hnh
  PSME_00035158-RA 140 EDGYKWRKYGKKSVKNNPNPRNYFRCSNSNCDVKKTVERDAHDEGIVITTYLGKHNH 196
                       8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-31127199IPR003657WRKY domain
SuperFamilySSF1182906.54E-27131199IPR003657WRKY domain
PROSITE profilePS5081129.757134199IPR003657WRKY domain
SMARTSM007741.2E-33139198IPR003657WRKY domain
PfamPF031062.2E-23140196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSPAPHFSKS LLCEFQELFA MANNFDSRAC HFEFATKAFS KAQSQPLQGP KSLQLTNEGT  60
QQFDPLDFLV LEKEFDHSCK SEDGDTVNSG SSTPLEYARN VLQTHEPLQT MNPQTNNRKR  120
KAERGVKYAF LTRSESDILE DGYKWRKYGK KSVKNNPNPR NYFRCSNSNC DVKKTVERDA  180
HDEGIVITTY LGKHNHGSPC VIFYIGNPQI LQLPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23132199774WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1231052e-31BT123105.1 Picea sitchensis clone WS0466_F07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022927982.12e-39probable WRKY transcription factor 51
TrEMBLA0A0D6R4C92e-51A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-31WRKY DNA-binding protein 51