PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00035159-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 198aa    MW: 22649.3 Da    PI: 8.4761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00035159-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29123179258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       +Dgy+WrKYG+K+vk+s++pr+Y+rC+ ++C vkk ver a+d+ +v++tY g+Hnh
  PSME_00035159-RA 123 EDGYKWRKYGKKSVKNSPNPRNYFRCSNSNCDVKKTVERHAHDEGIVITTYLGKHNH 179
                       8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-31110182IPR003657WRKY domain
SuperFamilySSF1182904.18E-27114182IPR003657WRKY domain
PROSITE profilePS5081129.471117182IPR003657WRKY domain
SMARTSM007747.5E-34122181IPR003657WRKY domain
PfamPF031063.6E-23123179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MANNFDSRVC HFEAAFKAFS EGQFQPLQGP NNLQHMNEGT QPFDPLDFLV LKKEFDHSCK  60
TEEHADSDTV NSGSSTPLEY GRTAIQTHEP LQTMIPQTNN RKRKAERGVK YAFLTRSESD  120
ILEDGYKWRK YGKKSVKNSP NPRNYFRCSN SNCDVKKTVE RHAHDEGIVI TTYLGKHNHG  180
SPCVIFYIGN PQILQLPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-23115182774WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R4C93e-51A0A0D6R4C9_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-30WRKY DNA-binding protein 57